Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6424g00007 ATGGCTCTCCAAGCTCTTCAATCACCCACCGCTGCCAACCCATCGTTCACTCCCTTCGAAGAAGACACTCTCACTTACTTAGACACGCCTTGGGCTAAGGGAAAGCGTTCTAAGCGTCCCCGGATGGACCAACACCCTTCATGCACCGAGGAGGAGTATCTCGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCTCTCGTGCTCCCGCTCCCATCCCCACCGCCGCCAAGCCTTCTCTCTCCGACAACAACTCCGCGCCTCTCCCCGCCAAAGTCTCCTATAAATGCTCCGTCTGCAACAAGGCCTTCTCCTCTTACCAAGCCCTCGGCGGGCACAAGGCCAGCCACCGTAAGTTATCTGGCGCCGGCGAAGACCAGCCCACCTCCTCCAGCGTCACCACGACTTCTGCCTCCAACGGCGGAGGTAGGACCCACGAGTGCTCCATATGCCACAAAACGTTCCCGACGGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGCGGCGGTGGTAACAGCGCCGTAACCGCCTCCGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTGAACCTGCCGGCTTTTCCGGACTTTCCAACGAGGTTCTCGACCGATGAGGAGGTTTCCAGCCCCCACCCATCGAAGAAGCCCCGTCTCCATCTGACCATCCCCAAGATTGAAATCCCTCGGTCCTGA 717 0.5969 MALQALQSPTAANPSFTPFEEDTLTYLDTPWAKGKRSKRPRMDQHPSCTEEEYLALCLIMLARGGSRAPAPIPTAAKPSLSDNNSAPLPAKVSYKCSVCNKAFSSYQALGGHKASHRKLSGAGEDQPTSSSVTTTSASNGGGRTHECSICHKTFPTGQALGGHKRCHYEGGGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFPTRFSTDEEVSSPHPSKKPRLHLTIPKIEIPRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6424g00007 238 MobiDBLite consensus disorder prediction 208 238 - -
Vium6424g00007 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Vium6424g00007 238 SMART c2h2final6 145 167 IPR013087 -
Vium6424g00007 238 SMART c2h2final6 94 116 IPR013087 -
Vium6424g00007 238 Pfam C2H2-type zinc finger 94 118 - -
Vium6424g00007 238 Pfam C2H2-type zinc finger 145 168 - -
Vium6424g00007 238 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Vium6424g00007 238 MobiDBLite consensus disorder prediction 215 238 - -
Vium6424g00007 238 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 201 IPR044653 GO:0003700
Vium6424g00007 238 MobiDBLite consensus disorder prediction 122 142 - -
Vium6424g00007 238 MobiDBLite consensus disorder prediction 116 142 - -
Vium6424g00007 238 Gene3D Classic Zinc Finger 92 167 - -
Vium6424g00007 238 SUPERFAMILY beta-beta-alpha zinc fingers 94 167 IPR036236 -
Vium6424g00007 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 167 IPR013087 -
Vium6424g00007 238 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6424g00007 Vium-Chr6424 47963 49193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6424g00007 1 235 C2H2 Transcription Factor Family AT1G27730 51.230 1.18e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6424g00007 zf-C2H2_6 2.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6424g00007 - - gmx:100776038 375.17