Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6424g00005 ATGGTGGAGCGAGAGCAAGGTGACAAGATGAATATGGTGATATTCAAGTCCCTTCTGATTTCTTTGTTGCTGGTTTTCTGTAGCAGACACACCGTAGCAGAAAAGAAAACCAATCACCACTCTAAAAGCACATACATAATTCACATGGACAAATTCAACATGCCATCAAGCTTCAATGACCATCTCCTCTGGTATGATTCGTCACTGAAATCAGTGTCAGAGTCAGCAGAGATGCTCTACACATACCAACATGTAGCTCATGGCTTCTCCACAAGGCTAACTAGCCAAGAAGCAGAGTTACTCTCAAAGCAACCCGGAATTCTCTCTGTCATCCCTGAAGTTAGATACGATCTTCACACAACTCGAACACCAGAGTTTCTGGGGTTGGGGAAAGCCATCACTTTTTCACTGGCCTCTGGAAAACAAAGCGATGTGGTTGTTGGAGTGCTAGACACTGGTGTGTGGCCTGAGCTAAAAAGCTTCGATGACAAGGGTCTTGAGCCAGTTCCAAGTAGCTGGAAAGGTGAGTGTGAGAGAGGTAAGAACTTCAACCCATCAAACTGTAACAAGAAGTTGATTGGTGCAAGGTTTTTCGCCAAGGGCTATGAGGCGGCGTTTGGACCCATCAATGAAAGTACAGAATCAAAGTCACCAAGGGATGATGATGGCCATGGAACTCACACCTCAACAACAGCAGCAGGCTCTGTAGTTGCAGGAGCTAGCCTCTTCGGCTTTGCTAATGGGACGGCAAGAGGAATGGCCACACAAGCCAGAGTTGCTACATACAAAGTGTGTTGGCTTGGAGGATGCTTTTCATCAGACATAGCTGCTGGTATTGACAAGGCCATTGCAGATGGTGTCAACATCCTTTCCATGTCAATTGGGGGAGGTTTGGCGGATTACTACAGAGACACTATTGCGATTGGAACCTTTGCTGCCACTGCCCACGGAATACTGGTTTCCACTTCAGCAGGAAATGGTGGGCCTAGTCAAGCATCTTTGTCTAATGTGGCACCATGGTTAACCACAGTTGGTGCTGGAACTATAGACCGTGACTTCCCTGCCTATGTCACCCTTGGAAATGGGAAGGCATACACTGGGGTGTCCCTTTACAATGGCAAACTCCCACCTAAGACTCCAATTCCAATTGTGTATGCCGGTAATGTAAGTGGTGATTCAGAAGGAAGTCAGTGCGGCAAAGGTAGTTTGATTGCTGCAAAAGTAGCAGGAAAAATCGTGATTTGTGACAGAGGAGGGAATCCAAGGGTGGAAAAGGGTCTGGTGGTGAAGAGTGCTGGAGGCATTGGGATGATACTAGCAAACAATGAAGATTACGGGGAAGAGTTAATAGCTGACTCTTATCTCCTTCCCGCACTAGCTTTGGGCCAGAAATCCAGCAATGAGCTAAAGAAGTATGTTTTCTCATCTCCCAATCCCACAGCTAAACTTTCGTTTGGTGGCACCCAGTTAGGGGTTCAACCATCCCCAGTGGTGGCAGCTTTCAGCTCAAGAGGGCCCAATTTGCTAACACCAAAGGTGCTCAAACCAGACCTGATAGCTCCAGGAGTTAACATCCTAGCTGGATGGACAGGTGCAGTTGGACCAACTGGTATGACTGAAGACACAAGGCATGTGGAATTCAACATCATCTCAGGCACATCCATGTCCTGCCCCCATGTCAGTGGGTTAGCTGCCCTTCTTAAGGGCACTCACCCAGAATGGAGCCCTGCAGCTATAAGGTCTGCCCTCATGACCACATCTTACAGAACCTACAAAAATGGGCAAACCTTAAAAGATGTTGACAATGGCCTACCAGCTACACCGTTTGATTTTGGGGCTGGACATGTAGATCCAGTGGCTGCTTTTGATCCTGGCCTTGTCTATGATGCCACCGTGGATGACTACTTGAGCTTCTTCTGTGCCCTGAAATACAGTTCCTATCAGATAAAGCTTGTTGCAAGGAGAGATTTTACTTGCAGCAAAAGGAAGAAGTACAGAGTGGAAGATCTCAACTACCCATCTTTTGCTGTTCCTTTTAACACGGCTTTTGGAGTAAAGGGTGGTTCTCAAAAACCAAACACTGTTCAGTACACAAGGACTTTAACAAACGTGGGTGCCCCAGCAACGTATACAGTTTCAGTGACGCAGTCTCCCTCGGTGAAGATTGTGGTTCAACCACAAACACTTAGTTTCCGTGAACTAAATGAGAAGAAGAGCTACACAGTTACGTTCACGTCTTCTTCAAAGCCTTCTGGGACAACCAGTTTTGCTTATCTAGAATGGTCTGATGGGAAACACAAGGTTTCTAGTCCCATTGCTTTCAGCTGGACTTGA 2334 0.4679 MVEREQGDKMNMVIFKSLLISLLLVFCSRHTVAEKKTNHHSKSTYIIHMDKFNMPSSFNDHLLWYDSSLKSVSESAEMLYTYQHVAHGFSTRLTSQEAELLSKQPGILSVIPEVRYDLHTTRTPEFLGLGKAITFSLASGKQSDVVVGVLDTGVWPELKSFDDKGLEPVPSSWKGECERGKNFNPSNCNKKLIGARFFAKGYEAAFGPINESTESKSPRDDDGHGTHTSTTAAGSVVAGASLFGFANGTARGMATQARVATYKVCWLGGCFSSDIAAGIDKAIADGVNILSMSIGGGLADYYRDTIAIGTFAATAHGILVSTSAGNGGPSQASLSNVAPWLTTVGAGTIDRDFPAYVTLGNGKAYTGVSLYNGKLPPKTPIPIVYAGNVSGDSEGSQCGKGSLIAAKVAGKIVICDRGGNPRVEKGLVVKSAGGIGMILANNEDYGEELIADSYLLPALALGQKSSNELKKYVFSSPNPTAKLSFGGTQLGVQPSPVVAAFSSRGPNLLTPKVLKPDLIAPGVNILAGWTGAVGPTGMTEDTRHVEFNIISGTSMSCPHVSGLAALLKGTHPEWSPAAIRSALMTTSYRTYKNGQTLKDVDNGLPATPFDFGAGHVDPVAAFDPGLVYDATVDDYLSFFCALKYSSYQIKLVARRDFTCSKRKKYRVEDLNYPSFAVPFNTAFGVKGGSQKPNTVQYTRTLTNVGAPATYTVSVTQSPSVKIVVQPQTLSFRELNEKKSYTVTFTSSSKPSGTTSFAYLEWSDGKHKVSSPIAFSWT 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6424g00005 777 Pfam PA domain 383 468 IPR003137 -
Vium6424g00005 777 FunFam subtilisin-like protease SBT1.5 350 490 - -
Vium6424g00005 777 CDD PA_subtilisin_like 356 483 - -
Vium6424g00005 777 SUPERFAMILY PA domain 405 446 IPR046450 -
Vium6424g00005 777 PRINTS Subtilisin serine protease family (S8) signature 551 567 IPR015500 -
Vium6424g00005 777 PRINTS Subtilisin serine protease family (S8) signature 220 233 IPR015500 -
Vium6424g00005 777 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Vium6424g00005 777 SUPERFAMILY Subtilisin-like 118 626 IPR036852 GO:0004252|GO:0006508
Vium6424g00005 777 Gene3D - 639 776 - -
Vium6424g00005 777 FunFam Subtilisin-like protease SBT1.5 144 362 - -
Vium6424g00005 777 Gene3D - 350 490 - -
Vium6424g00005 777 Pfam Subtilase family 143 614 IPR000209 GO:0006508|GO:0008236
Vium6424g00005 777 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 45 773 IPR045051 -
Vium6424g00005 777 FunFam Subtilisin-like protease SBT1.5 639 777 - -
Vium6424g00005 777 CDD Peptidases_S8_3 116 588 IPR034197 -
Vium6424g00005 777 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 27 119 IPR037045 -
Vium6424g00005 777 MobiDBLite consensus disorder prediction 209 231 - -
Vium6424g00005 777 Gene3D Peptidase S8/S53 domain 144 635 IPR036852 GO:0004252|GO:0006508
Vium6424g00005 777 Pfam Fibronectin type-III domain 669 773 IPR041469 -
Vium6424g00005 777 ProSitePatterns Serine proteases, subtilase family, serine active site. 552 562 IPR023828 -
Vium6424g00005 777 ProSiteProfiles Serine proteases, subtilase domain profile. 115 622 - -
Vium6424g00005 777 FunFam Subtilisin-like protease SBT1.9 33 119 - -
Vium6424g00005 777 Pfam Peptidase inhibitor I9 44 119 IPR010259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6424g00005 Vium-Chr6424 14757 17450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6424g00005 17 777 Subtilisin-like Serine Gene Family AT5G67360 64.575 0.0 1000
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6424g00005 - - gmx:100794284 1360.51