Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6424g00004 ATGAAGGAAGCAGAGGAGCAACTGTGCGAGGCGGCCAGAAAGGGTGACACGGAGAGAGTGAAGGCTCTCATAGACTCCGGCACCGATGTCACCCACTTTGACGGCGAGGGCCTCAACCCTCTTATGCACGCCGCAAAGCAAGGCCATGCACCCGTCCTCACTCTCCTCCTTTCTGCCGGCGCTCCCTGGAACGGCCTCTCTCCCTCCGGCCTCTCTTCCGGCGACTACGCCATGCAGGAAGGTCACAGCGAAGCCTTCGACCTTCTTCTAAACGCCGGGATTCAGGCCGAACTGATCCTGGGAACAATTGCGAGGAAGGAAAACAAGAGCGAAGATTCTGGTGTCGATTATTTGGAAGATAGAGTGAGTTTTAGTGAAGACAAGCTCATGGACTCTGAAAGCAAAGCTGTGATGATGGCGTGGGAGAAGCCGTTGATGGAGGCTCATGCCAAAGCTGTTTGTTCGGGAGGGGGCCACGTGCTCAATGTTGGGTTCGGAATGGGGCTCGTGGATTCGGCCATTCAGCAGTATGCACCTGCATCACACACCATCGTTGAGGCTCATCCGGAGGTGTATCAACGCATGCTTCGCTCCGGTTGGGGTCAGAAGGAAAATGTGAAGATAGTTTTTGGCCGATGGCAGGATGTTCTGTCTCAGCTTGAAACATATGATGGAATATTTTTTGACACCTATGGGGAGTACTACGATGATTTGAGGGAATTCCACCAATATCTCCCAACACTATTGAAGCCTGGTGGTATCTACTCATTCTTCAATGGCCTCTGCGGCAGTAATGCGTTTTTCCATGTTGTTTACTGCCATTTGGTATCACTTGAGCTTGAGAATTTGGGGTATTCCACGCAATTAATTCCATTACCTGTTAAGGATTGTTTAGGAGAACAAGTTTGGGAAGGTGTGAAACAAAGATATTGGCAGCTAGATACGTACTACCTTCCTGTCTGCCAGTCTGTAGAAGACCCTGAATGA 987 0.5056 MKEAEEQLCEAARKGDTERVKALIDSGTDVTHFDGEGLNPLMHAAKQGHAPVLTLLLSAGAPWNGLSPSGLSSGDYAMQEGHSEAFDLLLNAGIQAELILGTIARKENKSEDSGVDYLEDRVSFSEDKLMDSESKAVMMAWEKPLMEAHAKAVCSGGGHVLNVGFGMGLVDSAIQQYAPASHTIVEAHPEVYQRMLRSGWGQKENVKIVFGRWQDVLSQLETYDGIFFDTYGEYYDDLREFHQYLPTLLKPGGIYSFFNGLCGSNAFFHVVYCHLVSLELENLGYSTQLIPLPVKDCLGEQVWEGVKQRYWQLDTYYLPVCQSVEDPE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6424g00004 328 Pfam Ankyrin repeats (3 copies) 8 95 IPR002110 GO:0005515
Vium6424g00004 328 FunFam Arginine N-methyltransferase 2 104 323 - -
Vium6424g00004 328 FunFam Protein arginine N-methyltransferase 2 1 101 - -
Vium6424g00004 328 SMART ANK_2a 3 32 IPR002110 GO:0005515
Vium6424g00004 328 SMART ANK_2a 69 98 IPR002110 GO:0005515
Vium6424g00004 328 SMART ANK_2a 36 65 IPR002110 GO:0005515
Vium6424g00004 328 ProSiteProfiles Ankyrin repeat region circular profile. 36 61 - -
Vium6424g00004 328 CDD AdoMet_MTases 160 255 - -
Vium6424g00004 328 ProSiteProfiles Ankyrin repeat profile. 36 68 IPR002110 GO:0005515
Vium6424g00004 328 Gene3D - 1 107 IPR036770 -
Vium6424g00004 328 SUPERFAMILY Ankyrin repeat 8 95 IPR036770 -
Vium6424g00004 328 PIRSF Rmt2 1 116 IPR017408 GO:0016274
Vium6424g00004 328 PIRSF Rmt2 107 325 IPR017408 GO:0016274
Vium6424g00004 328 PANTHER GUANIDINOACETATE N-METHYLTRANSFERASE 7 323 - -
Vium6424g00004 328 ProSiteProfiles Arginine and arginine-like N-methyltransferase domain profile. 110 328 IPR026480 -
Vium6424g00004 328 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 321 IPR029063 -
Vium6424g00004 328 Gene3D Vaccinia Virus protein VP39 108 323 IPR029063 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6424g00004 3 96 MAP Kinase Kinase Kinase AT2G31800 32.979 2.28e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6424g00004 K18477 - gmx:100527621 629.017