Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6422g00001 ATGTCTGTTGAACCTAAAGAACTTTACTACCAGGACCTTGTCCTAGACCACAACAATCACCACGGAACAGTAGCAGCAGCAGCAGGAGTAGGAGGAGGATCTGACATGTACCAAAAGCACTTTTCCACTTCCTTAATCCCTGCTGCTTCAACACCCTATGACTCACAACCCTTTGATCCCTCCTACATGACCTTCACCGAGTGTTTGCAAGGGGGCATGGATTACAATTCTCTTGCAACTTCCTTTGGCCTTTCTCCTTCCTCATCCGAGGTTTTCTCATCTGTTGAAGGCAACCACAAGCCTGCAGAAGGAGGAGACGGAGGAGGAGCCACTGCTGCCACTGAAACCCTTGCCACTCTTAACTCGTCTATCTCTTCTTCGTCTTCTGAAGCCGGGGCTGAAGAAGATTCAGGAAAGAGCAAAAAGGATAGGCAGGTGAAGACAGAAGAAGGAGGAGGAGGAGGAGGAGAAAACTCTAAGAAAGGGAACAAGGATAAGAAGAAAGGAGAGAAGAAACAGAAGGAGCCAAGGTTTGCCTTCATGACCAAGAGTGAGGTTGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCTGTCAAGAATAGCCCTTATCCAAGGAGCTACTACAGGTGCACTACACAGAAGTGCACAGTGAAGAAACGCGTGGAGAGGTCGTTTCAGGACCCAACCACTGTGATAACAACGTATGAAGGTCAGCACAACCATCCGGTCCCCACATCGCTGAGAGGGAATGCGGCCGCAGGAATGTTCACACCTTCTTTGCTCGCCACACCAACTCCACTTGCAGCCGGGTCAAACTTCCCTCAAGATCTCTTCCTTCACATGCATCATCAGCATCACCACCACCACCACCACCCTCACCATCACTTTCACAACACCCTCTTCTCCACACAATCAACAAACGCCGTTACCACCACCAGCACCACCGTTACCACTGCTTCCACTCCTCCCTCCATTTACTCATCCTATAACATTAACAACTCTCTTCTTCACAACCAGTATCTTCCTTCGGAATATGGCCTCCTTCAAGACATAGTCCCTTCTATCTTCCACAACAAGACACACCACCAGAATTAA 1110 0.4856 MSVEPKELYYQDLVLDHNNHHGTVAAAAGVGGGSDMYQKHFSTSLIPAASTPYDSQPFDPSYMTFTECLQGGMDYNSLATSFGLSPSSSEVFSSVEGNHKPAEGGDGGGATAATETLATLNSSISSSSSEAGAEEDSGKSKKDRQVKTEEGGGGGGENSKKGNKDKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHPVPTSLRGNAAAGMFTPSLLATPTPLAAGSNFPQDLFLHMHHQHHHHHHHPHHHFHNTLFSTQSTNAVTTTSTTVTTASTPPSIYSSYNINNSLLHNQYLPSEYGLLQDIVPSIFHNKTHHQN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6422g00001 369 MobiDBLite consensus disorder prediction 114 133 - -
Vium6422g00001 369 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6422g00001 369 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6422g00001 369 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6422g00001 369 FunFam WRKY transcription factor 57 175 249 - -
Vium6422g00001 369 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 106 295 IPR044810 GO:0003700
Vium6422g00001 369 MobiDBLite consensus disorder prediction 86 178 - -
Vium6422g00001 369 MobiDBLite consensus disorder prediction 134 150 - -
Vium6422g00001 369 MobiDBLite consensus disorder prediction 159 178 - -
Vium6422g00001 369 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6422g00001 369 SMART WRKY_cls 189 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6422g00001 Vium-Chr6422 10874 13177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6422g00001 58 361 WRKY Transcription Factor Family AT4G18170 49.359 7.22e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium6422g00001 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6422g00001 - - gmx:100787050 458.759