Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium641g00001 ATGGAACTTGGTTTGAGCTTGGGAGACTCTTCAAGGCCTTTGCTCGGCTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACTGGGGTTAGGCTTCAGCACCGCGTTATCAATTGGGCCAGTCATCACTACACGAAAGGATCGGCAAGATGAACAAGAAGAATTTGAAGAAGAAGAAGAAACAAGGCAGAAGAGCAACAACAACATCAACACTGATACAACAGAAGATCCTTCCGAACCCAACAACAACAACCCAGTTCTGCATCAGCTCGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTATCATCTGAGTTGGGAGGTTCTTCCAGGGGCTTGGACGTGAACGCACAGCCGCCGCAGGCGGAGGATGAGGCAGAGGAGGTGGCGGCGCTGTCATCATCTCCGAACAGCGCAGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGGAGTTTCTATAAAAGGAACTATGAGGGTGAAGCTTATGATCAAAGGGCCTCTTCAAGAGCCAGTGATGAGGATGATAACAACGGCAGCGGCGGCAACGCCAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTCGAAGAGAGTTTCAAAGAACACAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTACGACCTCGCCAAGTAGAAGTATGGTTTCAAAACCGAAGAGCAAGGACGAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAAAGGTGTTGTGAGACACTAACGGAAGAGAATAGGAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGAGTTCAAACCCATTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAACGTGTGGCCACAAATTCCACATCCACTTCCTCCTCTCAGAGTGCTCCTAATGCCACCATCAATGCAAATTCAGGAGCCATGACCATTGTCAAAAGCACTGCCACCAACAATGACTCACCCTCCAAAGCCATTGGATTCCCATTTAGTAAACCCAGGTTTCATCCATTTGTCCACACTACCCAACAACCCCATCAACACCAATCTCCATCATCTTGA 1134 0.4744 MELGLSLGDSSRPLLGFMEKPREASNQLGLGFSTALSIGPVITTRKDRQDEQEEFEEEEETRQKSNNNINTDTTEDPSEPNNNNPVLHQLDLLPQLYLPWHPPSENGSLSSELGGSSRGLDVNAQPPQAEDEAEEVAALSSSPNSAASSFQMDLCIYNRGGSFYKRNYEGEAYDQRASSRASDEDDNNGSGGNARKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKSSNPFYMQLPATTLTMCPSCERVATNSTSTSSSQSAPNATINANSGAMTIVKSTATNNDSPSKAIGFPFSKPRFHPFVHTTQQPHQHQSPSS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium641g00001 377 MobiDBLite consensus disorder prediction 36 145 - -
Vium641g00001 377 Pfam Homeodomain 195 249 IPR001356 GO:0003677
Vium641g00001 377 Pfam Homeobox associated leucine zipper 251 285 IPR003106 GO:0006355|GO:0043565
Vium641g00001 377 Gene3D - 199 249 - -
Vium641g00001 377 MobiDBLite consensus disorder prediction 339 377 - -
Vium641g00001 377 Coils Coil 264 287 - -
Vium641g00001 377 SMART HOX_1 193 255 IPR001356 GO:0003677
Vium641g00001 377 ProSitePatterns 'Homeobox' domain signature. 226 249 IPR017970 GO:0000981|GO:0006355
Vium641g00001 377 Coils Coil 48 68 - -
Vium641g00001 377 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 65 325 - -
Vium641g00001 377 MobiDBLite consensus disorder prediction 173 199 - -
Vium641g00001 377 ProSiteProfiles 'Homeobox' domain profile. 191 251 IPR001356 GO:0003677
Vium641g00001 377 MobiDBLite consensus disorder prediction 66 89 - -
Vium641g00001 377 MobiDBLite consensus disorder prediction 361 377 - -
Vium641g00001 377 FunFam Homeobox-leucine zipper protein 18 178 256 - -
Vium641g00001 377 SUPERFAMILY Homeodomain-like 181 252 IPR009057 -
Vium641g00001 377 SMART halz 251 294 IPR003106 GO:0006355|GO:0043565
Vium641g00001 377 CDD homeodomain 195 252 IPR001356 GO:0003677
Vium641g00001 377 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium641g00001 Vium-Chr641 19443 21684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium641g00001 118 307 Homeobox Transcription Factor Family AT3G60390 59.091 1.03e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium641g00001 Homeodomain 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium641g00001 K09338 - gmx:100778742 506.138