Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6417g00003 ATGGGAAGACACTCTTGTTGCTACAAACACAAGTTACGGAAAGGCCTTTGGTCTCCTGAGGAAGATGAGAAGCTTCTGGATTACATCACCAAACATGGTCATGGATGTTGGAGTTCAGTCCCCAAACTTGCTGGTCTGCAGAGGTGTGGGAAGAGTTGTAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCGCAGGAGGAGGAGAACATGATCATTGAACTCCATGCAGTCCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATTAAAAACTTATGGAACTCGTGCCTGAAGAAGAAGCTGAGGCAAAGAAGCATTGACCCAAACACCCACAAACCACTCTCTGAGGTTGAGAAGGACAAGGACATGCTACCCTCAACCGACAAAACCAATCAGAAAGCCTCATTGGGATCCAATGAAGTGAGTTTGGTTGATCACCCAGCAAAAGCCTTGCCTTCTTCAGAGAGATACCCTCTTGAAGTTTCCACCAGTTCAACCCAGGAACTATTCCTAGATAGGTTTGGTGCTACCTGCCATGACAACAGTTGCAGGCCCTCTGATGTGGTAGGACCATACTTCTCCTTCCATCACTTCAACTATGGAACAACAAACATGGGCCTCTCTGCAAACCCCAACGCATCTCTTTCCTTCATTCCACCCTCCACCTCTTCAGACCTTAACAATTCCACCATATCCTCCTCTATGCTGCATTCGATTTTCCCAACACACGTGAAGCTCCAATCTAACGACAACCCTTCCATATCCTCAGATGCGGTTCAAAACTGGGAATCCAACAACACAAACAAAAGCAATGCCAGTATGCAGTTTCAAAGCAGCACAGACTTCCTTGAAAACACGTGGGGGGTGGCTGAGTCTGCAAAGGTTAACATTAACAAAGATGCTCAAGTGCCCCTTCAGACAGAACAAGAGGATCTAAAATGGTCCGAGTATCTTAACACCCCATTTATTCTGGGAAACACACCGGAGAATCAAATCCAAACCTCACAATCTATCTACAGTGAGGTCAAACCAGAAACAGGATTCATAACAGACGAGTCATGTACTAGTTGGCACCATCCGCCACCAGCTTTTCAACTTTCCGATATATATAGTAAGAATCTGCAGAGATTTTCAGTGACTTTTGGACAAACCCTTTAA 1203 0.4555 MGRHSCCYKHKLRKGLWSPEEDEKLLDYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEENMIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRSIDPNTHKPLSEVEKDKDMLPSTDKTNQKASLGSNEVSLVDHPAKALPSSERYPLEVSTSSTQELFLDRFGATCHDNSCRPSDVVGPYFSFHHFNYGTTNMGLSANPNASLSFIPPSTSSDLNNSTISSSMLHSIFPTHVKLQSNDNPSISSDAVQNWESNNTNKSNASMQFQSSTDFLENTWGVAESAKVNINKDAQVPLQTEQEDLKWSEYLNTPFILGNTPENQIQTSQSIYSEVKPETGFITDESCTSWHHPPPAFQLSDIYSKNLQRFSVTFGQTL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6417g00003 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium6417g00003 400 MobiDBLite consensus disorder prediction 122 173 - -
Vium6417g00003 400 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium6417g00003 400 FunFam MYB transcription factor 68 140 - -
Vium6417g00003 400 Gene3D - 11 67 - -
Vium6417g00003 400 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium6417g00003 400 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium6417g00003 400 CDD SANT 17 61 IPR001005 -
Vium6417g00003 400 Gene3D - 68 141 - -
Vium6417g00003 400 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium6417g00003 400 SMART sant 66 114 IPR001005 -
Vium6417g00003 400 SMART sant 13 63 IPR001005 -
Vium6417g00003 400 FunFam Myb transcription factor 11 67 - -
Vium6417g00003 400 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vium6417g00003 400 PANTHER MYB DOMAIN PROTEIN 55 1 311 - -
Vium6417g00003 400 MobiDBLite consensus disorder prediction 122 142 - -
Vium6417g00003 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium6417g00003 400 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6417g00003 Vium-Chr6417 24222 26389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6417g00003 1 400 MYB Transcription Factor Family AT1G09540 49.880 2.56e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium6417g00003 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6417g00003 K09422 - gmx:778072 644.039