Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6417g00002 ATGGAAAAGAACGCGACAATGGTCTCTGCTGTTTCTCTCATTCTCGTAGTAGGCGTTGCCCTAGGCGTTGTCGCTTTTGTCTCCACCGGCAACAACGACGAACCCGCCACCTCAGGCGACACCACCGGAAAGGTGACCACCCACACGAAAGCCGTGCAAGCCGTGTGCCAAAACACTGACGATAAGAAGTTCTGCTCTGACACTTTCAGCTCCGTCAACACCTCAGACCCAACCGCATACGTCCAAACCGTGGTGAAAAAAGCCATGGACGACGTCATCAAAGGCTTCAACCTAAGCGATACTCTAAAGGTCGAAAACAGCAAGGGAAATTCAACCGTCAAGATGGCCCTTGATGATTGCAAGGACCTGTTGGAATTCGCCATCGACGAGTTACAAGCGTCTGAGATTCTAGTCAAAGAGAACAACATTAACAACATCAACGACCGCGCTGCGGACCTCAAAAACTGGATTGGCGCCGTCGTTGCATACAAGGAATCGTGCCTGGACGGGTTCGACACGGACGGGGAGAAGGAGGTGCAATCCAAGTTGAAAACCGAAAGTTTGGACGGAATTGGGAAGTTAACGGGGTTAGCTCTTGACGTTGTGTCCGGCTTCGCGGAAGTACTCTCGGGCTTCAATTTAGATCTGACTGCCAAGACTTCGTCTCGTCGTCTTCTCGATGTGGACCAAGAGGGATATCCATCGTGGTTGTCCATGCCGGATCGGAAGCTCTTGGCGGACACAGCTTCCGTTAAACCTAACGCGGTTGTTGCCAAGGATGGTAGTGGCGATTATAAGACCGTTGAGGAGGCCATTAACTCCTACCCCAAAAATCATCAGGGCAGATTCATTATCTACGTCAAGGCCGGTACCTATGATGAATACATCAAAGTTGACAAAAAGAAGAATAGAATTCTGCTATACGGCGATGGCCCCACAAAGACAATTATCACCGGCAATAAAAACGTGGTTGATGGTTATAAGACAATTAGAACTGCTACCTTCTCGACGGTTGCAGAAGATTTCATGGCAAAGTCTATTGCATTTGTGAACTCTGCCGGCGCGGCGAAACACCAAGCAGTGGCATTGCGCGTTCAAGGCGATAGGTCGGCCTTCTTCGACTGCGCCATGCACGGTTACCAGGACACGTTGTACACCCACGCTCATCGTCAGTTCTACCGCAACTGCGAAATCTCTGGCACGGTGGATTTCATTTTCGGCTACGGCACCACCCTGATCCAGAACTCGAAGATCGTTGTGCGGAAGCCAGATCCGAATCAGCAGAACATTATCGTGGCGGACGGGACGGACCAAAAGAACATGCCGACGGGAGCGGTGCTGCAAAACTGCGATATCATTGCGGAGCCGGAACTGGAGAAGGTAAAGACGTCGTTTAAGACGTACTTGGCGAGGCCGTGGAAGGCATATTCGAGGGCAATCTTCCTAGAAAACACGATCACCGATGTGATTCAGCCAGATGGGTATCTTCCCTGGAATGGGAACCTGAACCTGGACACGTGTTTCTTTGCTGAGTACGAGAACACTGGGGCCGGTGCCGATCTGAAAGCTAGGGTGAAATGGAGTCGCGGGGTCCTTAGCAAGGCCGATGCTAACAAATACACCGCTGACCAATGGCTCCAGGCAAACGCCTGGCTCCCTGCTACTGGCATTCCTTTCACTCCCGGTCTCACCAAACCTTTAACTCAAACTCACCCATCAACAAATCCATGTCCTGTCCCCATTAACCAAAACAATCTTGCTATATATCCATTCTTACTTAGGTTTAGATGA 1791 0.5064 MEKNATMVSAVSLILVVGVALGVVAFVSTGNNDEPATSGDTTGKVTTHTKAVQAVCQNTDDKKFCSDTFSSVNTSDPTAYVQTVVKKAMDDVIKGFNLSDTLKVENSKGNSTVKMALDDCKDLLEFAIDELQASEILVKENNINNINDRAADLKNWIGAVVAYKESCLDGFDTDGEKEVQSKLKTESLDGIGKLTGLALDVVSGFAEVLSGFNLDLTAKTSSRRLLDVDQEGYPSWLSMPDRKLLADTASVKPNAVVAKDGSGDYKTVEEAINSYPKNHQGRFIIYVKAGTYDEYIKVDKKKNRILLYGDGPTKTIITGNKNVVDGYKTIRTATFSTVAEDFMAKSIAFVNSAGAAKHQAVALRVQGDRSAFFDCAMHGYQDTLYTHAHRQFYRNCEISGTVDFIFGYGTTLIQNSKIVVRKPDPNQQNIIVADGTDQKNMPTGAVLQNCDIIAEPELEKVKTSFKTYLARPWKAYSRAIFLENTITDVIQPDGYLPWNGNLNLDTCFFAEYENTGAGADLKARVKWSRGVLSKADANKYTADQWLQANAWLPATGIPFTPGLTKPLTQTHPSTNPCPVPINQNNLAIYPFLLRFR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6417g00002 596 SUPERFAMILY Pectin lyase-like 251 562 IPR011050 -
Vium6417g00002 596 Gene3D - 248 563 IPR012334 -
Vium6417g00002 596 PANTHER PECTINESTERASE 19 555 - -
Vium6417g00002 596 CDD PMEI-like_3 54 206 - -
Vium6417g00002 596 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Vium6417g00002 596 FunFam Pectinesterase 48 206 - -
Vium6417g00002 596 SMART PMEI_2 47 201 IPR006501 GO:0004857
Vium6417g00002 596 NCBIfam pectinesterase inhibitor domain 45 187 IPR006501 GO:0004857
Vium6417g00002 596 Pfam Plant invertase/pectin methylesterase inhibitor 51 198 IPR006501 GO:0004857
Vium6417g00002 596 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 205 IPR035513 -
Vium6417g00002 596 FunFam Pectinesterase 248 563 - -
Vium6417g00002 596 Pfam Pectinesterase 254 548 IPR000070 GO:0030599|GO:0042545
Vium6417g00002 596 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 186 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6417g00002 Vium-Chr6417 13393 15743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6417g00002 2 563 Carbohydrate Esterase AT3G05610 41.506 3.77e-147 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6417g00002 K01051 - gmx:100820142 889.026