Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6417g00001 ATGGGAAACCTCTTCTGGCCTGGCATTGTTGCAGCACTTGTTTTTGGCTTCTGGGTTGATGCTTTTTCAGCCTTTCAATATCACTACTTCAATGAAACCGAGTTCTCTTTGTTGGAGGCTCGAGAACAACCATATTCGTCCCTCATTGGGAGGTCTCCTCTTATGGTAGGACTCACACTCATTCCAAGTGCTGCTGCCAAAGGAGCAGTTTGCTTGGATGGAACATTGCCTGGCTATCATTTACATCGGGGATATGGATCAGGAGCTAACAGCTGGATTGTTAATTTAGAGGGAGGTGGGTGGTGTAATGACGTTAAATCATGTGTTTATCGCAAGAAAACACGGCGTGGATCATCAAGATTCATGGAGAAACAGATACCATTTACAGGAATATTAAGCAATAGTGCTGAAGATAATCCAGATTTTTTCAACTGGAACAGAGTGAAAATTCGTTATTGTGATGGTGCATCGTTTGCCGGGGATAGTGAACATCAGGCTGCTCAACTACAATTTAGAGGACAACGTATATGGTTGGCTGCAGTGGAAGATTTGATGTCAAAGGGAATGAGATTTGCCAAGCAGGCTATGCTTTCTGGATGCTCCGCCGGTGGTCTGGCTACGATTATACACTGTGATGAATTTCGAGGGTTTTTCCCACACACTACCAAAGTGAAGTGTCTCAGTGATGCAGGGTTATTTCTTGATGCGATTGACGTGTCTAGGGGACATAGCATCAGGAATCTTTTCAGTGGTGTCGTAGAGCTGCAGGGAGTGCAGAAGAATCTACCTCGCACTTGTACTAATCACCTCGATCCCACTTCGTGCTTCTTCCCTCAGAACTTGATTGCCAATATTAGAACCCCGCTATTCATTCTTAATACCGCTTATGACTCATGGCAGATACAATCAAGCTTAGCTCCTTCATCGGCTGATCCCCGTGGCTATTGGCATGATTGTAGATTAAATCATGCTAAATGTACTGCTTCACAAATCCAATATTTGCAAGGATTCAGGAATCAAATGCTGAATGGTATTAAAAGCTTCTCAAGATCATATCAGAATGGATTATTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAGGCAGGATACATGGTTTGCAGACAATTCTCCTGTCATTGGGAACAAGGCAATTGCTCTGGCTGTTGGAGACTGGTATTTCGACCGAGCAGTTGTTAAGGCCATTGATTGCCCTTACCCTTGTGATAATACGTGCCACCATCTTGTCTTCAGATGA 1260 0.4365 MGNLFWPGIVAALVFGFWVDAFSAFQYHYFNETEFSLLEAREQPYSSLIGRSPLMVGLTLIPSAAAKGAVCLDGTLPGYHLHRGYGSGANSWIVNLEGGGWCNDVKSCVYRKKTRRGSSRFMEKQIPFTGILSNSAEDNPDFFNWNRVKIRYCDGASFAGDSEHQAAQLQFRGQRIWLAAVEDLMSKGMRFAKQAMLSGCSAGGLATIIHCDEFRGFFPHTTKVKCLSDAGLFLDAIDVSRGHSIRNLFSGVVELQGVQKNLPRTCTNHLDPTSCFFPQNLIANIRTPLFILNTAYDSWQIQSSLAPSSADPRGYWHDCRLNHAKCTASQIQYLQGFRNQMLNGIKSFSRSYQNGLFINSCFAHCQSERQDTWFADNSPVIGNKAIALAVGDWYFDRAVVKAIDCPYPCDNTCHHLVFR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6417g00001 419 Pfam Pectinacetylesterase 53 398 IPR004963 GO:0016787
Vium6417g00001 419 PANTHER NOTUM-RELATED 54 415 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6417g00001 Vium-Chr6417 148 5152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6417g00001 55 419 Carbohydrate Esterase AT1G57590 73.699 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6417g00001 K19882 - gmx:100793403 803.512