Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00044 ATGGCGAGCAAAACAAAGATTTACATTGTTATGGAGTTACTTGATGGAGGAGAGCTATTTGACAAAATAGCTGCAAAGGGGAAACTTGAAGAAGATGAAGCTAGAAATTATTTCCAACAACTTATTAATGCTGTTGACTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCGAATAGTGTTCTTAAAGTTTCAGATTTTGGGTTGAGTACATACACGCAGAAAGAGGATGAACTGCTCCGCACTGCATGTGGAACCCCAAATTATGTTGCTCCTGAGGTGATTCATAATAAAGGCTATGTTGGTTCTACATCTGATATTTGGTCTTGCGGAGTCATTCTCTTTGTACTTATGGCTGGGTTCATGCCTTTTGATGCGCCAACTCATATGGCTCTGTTCAAGAAAATTATCAAGGCAGAATTCACTTGTCCATCATGGTTTCCACCACAGGCAAAGACACTGCTGAAACGCATTCTAGACCCAAATCCTCAAACGAGGATAAAAATTCCTGAGCTCTTAAAAGACGAGTGGTTCAAGAAAGGATACAAGCCAACATCTTTTACTGAGGAAGAGGACCTAAGCATGGATGATGTAGCCTTCGCTTTCAACGAGTCTAATAAAAATCTAGTGACAGAAAGAAAAGTGAAACCCGTCTACATGAATGCTTTTGAGCTCATTTCTAGGTCACAAAGTTTCAATCTTGACAGTTTGTTCGAGATGCAAACGGATGAAGTAAAGCAAGAAACCTGTTTTACTTCACAGTGCCCTGCAATTGAAATTATGCACAAAATTGAAGAAGCAGCCAAGCCGCTGGGATTTAATGTACAAATCCAAAATTATAAGATGAAGCTGCAAGGTGACCAGAACGGAAGGAAGGGTCACCTTTCAATGGCTACTGAGGTTTTTGAAGTGGCTCCCTCAGTGCACATGGTGGAACTTCGAAAGACAGGGGGTGATACACTTGAGTTTCATAAGGCATGTGAAAGTTCCTACTCTTTGCTTCGGATCCAGAATTCAAGACCCAATTTTTCAAAATCTGGAATCCAAATTCAACTTATTATTTGGGTTTCTTACCAAAGCTGA 1110 0.4054 MASKTKIYIVMELLDGGELFDKIAAKGKLEEDEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNSVLKVSDFGLSTYTQKEDELLRTACGTPNYVAPEVIHNKGYVGSTSDIWSCGVILFVLMAGFMPFDAPTHMALFKKIIKAEFTCPSWFPPQAKTLLKRILDPNPQTRIKIPELLKDEWFKKGYKPTSFTEEEDLSMDDVAFAFNESNKNLVTERKVKPVYMNAFELISRSQSFNLDSLFEMQTDEVKQETCFTSQCPAIEIMHKIEEAAKPLGFNVQIQNYKMKLQGDQNGRKGHLSMATEVFEVAPSVHMVELRKTGGDTLEFHKACESSYSLLRIQNSRPNFSKSGIQIQLIIWVSYQS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00044 369 Gene3D Kinase associated domain 1, KA1 223 345 - -
Vium6403g00044 369 SMART serkin_6 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00044 369 FunFam Non-specific serine/threonine protein kinase 223 345 - -
Vium6403g00044 369 Gene3D Transferase(Phosphotransferase) domain 1 14 215 - -
Vium6403g00044 369 Pfam NAF domain 226 285 IPR004041 GO:0007165
Vium6403g00044 369 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 338 - -
Vium6403g00044 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 53 65 IPR008271 GO:0004672|GO:0006468
Vium6403g00044 369 FunFam Non-specific serine/threonine protein kinase 14 194 - -
Vium6403g00044 369 SUPERFAMILY Protein kinase-like (PK-like) 4 205 IPR011009 -
Vium6403g00044 369 Pfam Protein kinase domain 2 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00044 369 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00044 369 ProSiteProfiles NAF domain profile. 224 248 IPR018451 GO:0007165
Vium6403g00044 369 CDD CIPK_C 230 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00044 Vium-Chr6403 242561 246187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00044 1 340 CBL-interacting serine-threonine protein kinases AT1G01140 70.554 0.0 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium6403g00044 Pkinase 2.9e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00044 - - pvu:PHAVU_009G257000g 615.535