Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00042 ATGAGTTTCAAGGTAGCAAAAGGTGGTGTCGTGGTTGGGAAATACGAGCTGGGAAAAACCATTGGAGAAGGAAGCTTTGCGAAGGTGAAGTTCGCCAGAGATGTCAACAACGGCAACAACGTTGCCATCAAAATCCTCGACCGCAAACATGTCCTCCGCCACAACATGATGGAACAGCTGCAGCGAGAAATATCCACCATGAGACTCATCGATCACCCAAATGTTACTAAAATATTTGAGGTGATGGCGAGCAAAACAAAGATTTACATTGTTATGGAGTTACTTGATGGAGGAGAGCTATTTGACAAAATAGCTGCAAAGGGGAAACTTGAAGAAGATGAAGCTAGAAATTATTTCCAACAACTTATTAATGCTGTTGACTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCGAATAGTGTTCTTAAAGTTTCAGATTTTGGGTTGAGTACATACACGCAGAAAGAGGATGAACTGCTCCGCACTGCATGTGGAACCCCAAATTATGTTGCTCCTGAGGTGATTCATAATAAAGGCTATGTTGGTTCTACATCTGATATTTGGTCTTGCGGAGTCATTCTCTTTGTACTTATGGCTGGGTTCATGCCTTTTGATGCGCCAACTCATATGGCTCTGTTCAAGAAAATTATCAAGGCAGAATTCACTTGTCCATCATGGTTTCCACCACAGGCAAAGACACTGCTGAAACGCATTCTAGACCCAAATCCTCAAACGAGGATAAAAATTCCTGAGCTCTTAAAAGACGAGTGGTTCAAGAAAGGATACAAGCCAACATCTTTTACTGAGGAAGAGGACCTAAGCATGGATGATGTAGCCTTCGCTTTCAACGAGTCTAATAAAAATCTAGTGACAGAAAGAAAAGTGAAACCCGTCTACATGAATGCTTTTGAGCTCATTTCTAGGTCACAAAGTTTCAATCTTGACAGTTTGTTCGAGATGCAAACGGATGAAGTAAAGCAAGAAACCTGTTTTACTTCACAGTGCCCTGCAATTGAAATTATGCACAAAATTGAAGAAGCAGCCAAGCCGCTGGGATTTAATGTACAAATCCAAAATTATAAGATGAAGCTGCAAGGTGACCAGAACGGAAGGAAGGGTCACCTTTCAATGGCTACTGAGGTTTTTGAAGTGGCTCCCTCAGTGCACATGGTGGAACTTCGAAAGACAGGGGGTGATACACTTGAGTTTCATAAGGCATGTGAAAGTTCCTACTCTTTGCTTCGGATCCAGAATTCAAGACCCAATTTTTCAAAATCTGGAATCCAAATTCAACTTATTATTTGGGTTTCTTACCAAAGCTGA 1353 0.4161 MSFKVAKGGVVVGKYELGKTIGEGSFAKVKFARDVNNGNNVAIKILDRKHVLRHNMMEQLQREISTMRLIDHPNVTKIFEVMASKTKIYIVMELLDGGELFDKIAAKGKLEEDEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNSVLKVSDFGLSTYTQKEDELLRTACGTPNYVAPEVIHNKGYVGSTSDIWSCGVILFVLMAGFMPFDAPTHMALFKKIIKAEFTCPSWFPPQAKTLLKRILDPNPQTRIKIPELLKDEWFKKGYKPTSFTEEEDLSMDDVAFAFNESNKNLVTERKVKPVYMNAFELISRSQSFNLDSLFEMQTDEVKQETCFTSQCPAIEIMHKIEEAAKPLGFNVQIQNYKMKLQGDQNGRKGHLSMATEVFEVAPSVHMVELRKTGGDTLEFHKACESSYSLLRIQNSRPNFSKSGIQIQLIIWVSYQS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00042 450 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 419 - -
Vium6403g00042 450 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Vium6403g00042 450 SMART serkin_6 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00042 450 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Vium6403g00042 450 ProSiteProfiles Protein kinase domain profile. 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00042 450 FunFam Non-specific serine/threonine protein kinase 304 426 - -
Vium6403g00042 450 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Vium6403g00042 450 Gene3D Transferase(Phosphotransferase) domain 1 95 295 - -
Vium6403g00042 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vium6403g00042 450 SUPERFAMILY Protein kinase-like (PK-like) 11 286 IPR011009 -
Vium6403g00042 450 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vium6403g00042 450 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00042 450 CDD CIPK_C 311 427 - -
Vium6403g00042 450 Gene3D Kinase associated domain 1, KA1 304 426 - -
Vium6403g00042 450 Pfam NAF domain 307 366 IPR004041 GO:0007165
Vium6403g00042 450 FunFam Non-specific serine/threonine protein kinase 9 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00042 Vium-Chr6403 242561 246467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00042 12 421 CBL-interacting serine-threonine protein kinases AT1G01140 69.734 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium6403g00042 Pkinase 1.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00042 - - gmx:100777218 706.057