Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00041 ATGAGTTTCAAGGTAGCAAAAGGTGGTGTCGTGGTTGGGAAATACGAGCTGGGAAAAACCATTGGAGAAGGAAGCTTTGCGAAGGTGAAGTTCGCCAGAGATGTCAACAACGGCAACAACGTTGCCATCAAAATCCTCGACCGCAAACATGTCCTCCGCCACAACATGATGGAACAGCTGCAGCGAGAAATATCCACCATGAGACTCATCGATCACCCAAATGTTACTAAAATATTTGAGGTGATGGCGAGCAAAACAAAGATTTACATTGTTATGGAGTTACTTGATGGAGGAGAGCTATTTGACAAAATAGCTGCAAAGGGGAAACTTGAAGAAGATGAAGCTAGAAATTATTTCCAACAACTTATTAATGCTGTTGACTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCGAATAGTGTTCTTAAAGTTTCAGATTTTGGGTTGAGTACATACACGCAGAAAGAGGATGAACTGCTCCGCACTGCATGTGGAACCCCAAATTATGTTGCTCCTGAGGTGATTCATAATAAAGGCTATGTTGGTTCTACATCTGATATTTGGTCTTGCGGAGTCATTCTCTTTGTACTTATGGCTGGGTTCATGCCTTTTGATGCGCCAACTCATATGGCTCTGTTCAAGAAAGTAAGTCATTTTAGATTATTATTATTACTATTAATATTTTATTACCTATGGCATGAGAATTTATCGTTCTTTATACAAGTCCTAATCTATAATACTACTACATTTCAGATTATCAAGGCAGAATTCACTTGTCCATCATGGTTTCCACCACAGGCAAAGACACTGCTGAAACGCATTCTAGACCCAAATCCTCAAACGAGGATAAAAATTCCTGAGCTCTTAAAAGACGAGTGGTTCAAGAAAGGATACAAGCCAACATCTTTTACTGAGGAAGAGGACCTAAGCATGGATGATGTAGCCTTCGCTTTCAACGAGTCTAATAAAAATCTAGTGACAGAAAGAAAAGTGAAACCCGTCTACATGAATGCTTTTGAGCTCATTTCTAGGTCACAAAGTTTCAATCTTGACAGTTTGTTCGAGATGCAAACGGATGAAGTAAAGCAAGAAACCTGTTTTACTTCACAGTGCCCTGCAATTGAAATTATGCACAAAATTGAAGAAGCAGCCAAGCCGCTGGGATTTAATGTACAAATCCAAAATTATAAGATGAAGCTGCAAGGTGACCAGAACGGAAGGAAGGGTCACCTTTCAATGGCTACTGAGGTTTTTGAAGTGGCTCCCTCAGTGCACATGGTGGAACTTCGAAAGACAGGGGGTGATACACTTGAGTTTCATAAGTTCTACAAAATCTTCTCATCAGGGTTGCAAGATATTTTCTGGCATACAGAAGAAAAAAAATGA 1416 0.4018 MSFKVAKGGVVVGKYELGKTIGEGSFAKVKFARDVNNGNNVAIKILDRKHVLRHNMMEQLQREISTMRLIDHPNVTKIFEVMASKTKIYIVMELLDGGELFDKIAAKGKLEEDEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNSVLKVSDFGLSTYTQKEDELLRTACGTPNYVAPEVIHNKGYVGSTSDIWSCGVILFVLMAGFMPFDAPTHMALFKKVSHFRLLLLLLIFYYLWHENLSFFIQVLIYNTTTFQIIKAEFTCPSWFPPQAKTLLKRILDPNPQTRIKIPELLKDEWFKKGYKPTSFTEEEDLSMDDVAFAFNESNKNLVTERKVKPVYMNAFELISRSQSFNLDSLFEMQTDEVKQETCFTSQCPAIEIMHKIEEAAKPLGFNVQIQNYKMKLQGDQNGRKGHLSMATEVFEVAPSVHMVELRKTGGDTLEFHKFYKIFSSGLQDIFWHTEEKK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00041 471 FunFam Non-specific serine/threonine protein kinase 340 466 - -
Vium6403g00041 471 Gene3D Kinase associated domain 1, KA1 344 466 - -
Vium6403g00041 471 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Vium6403g00041 471 ProSiteProfiles Protein kinase domain profile. 15 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00041 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vium6403g00041 471 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vium6403g00041 471 FunFam Maternal embryonic leucine zipper kinase 9 233 - -
Vium6403g00041 471 Gene3D Transferase(Phosphotransferase) domain 1 97 343 - -
Vium6403g00041 471 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Vium6403g00041 471 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 451 - -
Vium6403g00041 471 CDD CIPK_C 347 454 - -
Vium6403g00041 471 SUPERFAMILY Protein kinase-like (PK-like) 11 322 IPR011009 -
Vium6403g00041 471 Pfam Protein kinase domain 15 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00041 471 Pfam NAF domain 343 402 IPR004041 GO:0007165
Vium6403g00041 471 SMART serkin_6 15 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00041 471 ProSiteProfiles NAF domain profile. 341 365 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00041 Vium-Chr6403 242171 246467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00041 12 468 CBL-interacting serine-threonine protein kinases AT1G01140 63.793 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium6403g00041 Pkinase 5.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00041 - - vum:124843116 895.575