Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00040 ATGAGTTTCAAGGTAGCAAAAGGTGGTGTCGTGGTTGGGAAATACGAGCTGGGAAAAACCATTGGAGAAGGAAGCTTTGCGAAGGTGAAGTTCGCCAGAGATGTCAACAACGGCAACAACGTTGCCATCAAAATCCTCGACCGCAAACATGTCCTCCGCCACAACATGATGGAACAGCTGCAGCGAGAAATATCCACCATGAGACTCATCGATCACCCAAATGTTACTAAAATATTTGAGGTGATGGCGAGCAAAACAAAGATTTACATTGTTATGGAGTTACTTGATGGAGGAGAGCTATTTGACAAAATAGCTGCAAAGGGGAAACTTGAAGAAGATGAAGCTAGAAATTATTTCCAACAACTTATTAATGCTGTTGACTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCGAATAGTGTTCTTAAAGTTTCAGATTTTGGGTTGAGTACATACACGCAGAAAGAGGATGAACTGCTCCGCACTGCATGTGGAACCCCAAATTATGTTGCTCCTGAGGTGATTCATAATAAAGGCTATGTTGGTTCTACATCTGATATTTGGTCTTGCGGAGTCATTCTCTTTGTACTTATGGCTGGGTTCATGCCTTTTGATGCGCCAACTCATATGGCTCTGTTCAAGAAAATTATCAAGGCAGAATTCACTTGTCCATCATGGTTTCCACCACAGGCAAAGACACTGCTGAAACGCATTCTAGACCCAAATCCTCAAACGAGGATAAAAATTCCTGAGCTCTTAAAAGACGAGTGGTTCAAGAAAGGATACAAGCCAACATCTTTTACTGAGGAAGAGGACCTAAGCATGGATGATGTAGCCTTCGCTTTCAACGAGTCTAATAAAAATCTAGTGACAGAAAGAAAAGTGAAACCCGTCTACATGAATGCTTTTGAGCTCATTTCTAGGTCACAAAGTTTCAATCTTGACAGTTTGTTCGAGATGCAAACGGATGAAGTAAAGCAAGAAACCTGTTTTACTTCACAGTGCCCTGCAATTGAAATTATGCACAAAATTGAAGAAGCAGCCAAGCCGCTGGGATTTAATGTACAAATCCAAAATTATAAGATGAAGCTGCAAGGTGACCAGAACGGAAGGAAGGGTCACCTTTCAATGGCTACTGAGGTTTTTGAAGTGGCTCCCTCAGTGCACATGGTGGAACTTCGAAAGACAGGGGGTGATACACTTGAGTTTCATAAGTTCTACAAAATCTTCTCATCAGGGTTGCAAGATATTTTCTGGCATACAGAAGAAAAAAAATGA 1308 0.4159 MSFKVAKGGVVVGKYELGKTIGEGSFAKVKFARDVNNGNNVAIKILDRKHVLRHNMMEQLQREISTMRLIDHPNVTKIFEVMASKTKIYIVMELLDGGELFDKIAAKGKLEEDEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNSVLKVSDFGLSTYTQKEDELLRTACGTPNYVAPEVIHNKGYVGSTSDIWSCGVILFVLMAGFMPFDAPTHMALFKKIIKAEFTCPSWFPPQAKTLLKRILDPNPQTRIKIPELLKDEWFKKGYKPTSFTEEEDLSMDDVAFAFNESNKNLVTERKVKPVYMNAFELISRSQSFNLDSLFEMQTDEVKQETCFTSQCPAIEIMHKIEEAAKPLGFNVQIQNYKMKLQGDQNGRKGHLSMATEVFEVAPSVHMVELRKTGGDTLEFHKFYKIFSSGLQDIFWHTEEKK 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00040 435 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Vium6403g00040 435 SMART serkin_6 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00040 435 ProSiteProfiles Protein kinase domain profile. 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00040 435 FunFam Non-specific serine/threonine protein kinase 304 430 - -
Vium6403g00040 435 Gene3D Transferase(Phosphotransferase) domain 1 95 295 - -
Vium6403g00040 435 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00040 435 Pfam NAF domain 307 366 IPR004041 GO:0007165
Vium6403g00040 435 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Vium6403g00040 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vium6403g00040 435 CDD CIPK_C 311 418 - -
Vium6403g00040 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 415 - -
Vium6403g00040 435 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vium6403g00040 435 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Vium6403g00040 435 SUPERFAMILY Protein kinase-like (PK-like) 11 286 IPR011009 -
Vium6403g00040 435 FunFam Non-specific serine/threonine protein kinase 9 307 - -
Vium6403g00040 435 Gene3D Kinase associated domain 1, KA1 304 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00040 Vium-Chr6403 242171 246467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00040 12 432 CBL-interacting serine-threonine protein kinases AT1G01140 69.159 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium6403g00040 Pkinase 1.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00040 - - gmx:100777218 738.799