Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00037 ATGTCAGAAGGTGCAGAAATTGACGAGCGAGTGGACCTTGATGAAGAAAATTTCATGGAAGAGATCGATGATGATGTTGAAGAACAAATAGATGACGACGGAGTGGATGGAGGTGAAGATGAAAACGTTGAAGGTAGTGTTGAGGAACATGAATACGAGGACTCAACAGCAGACGTTGGTGAGAAGGACCAATTACCTGAAGCAGAAAAAAGTGACATTGCCACTGAATTTGGTGATGATGATCAAAAACCGTCATTCATCGATGAAGATGAGAAAGAGAAGCATGACGAACTTCTTGCCCTTCCACCTCATGGTTCCGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGATTTGTGCGAGCCGATGGGTGACATTCTTGAGGTACGATTAATGAAAGACAGGGACACTGGTGAAAACAAGGGTTATGCCTTTGTTGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCAATCGAGGAGATACATAGCAGGGAATTTAAGGGTAAAACTTTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACATGGACGGAAGATGACTTTAGGAAAGTCATTGAAGGAGTTGGTCCTGGAGTTGAAAACATCGAGCTCATAAAGGACCCTCAAAATCCAAGTAGGAATCGTGGATTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCTCGGCAAAAGATGTCAAATGCAAGCTTTAAGCTGGATGGCAATACACCCACTGTCACATGGGCAGATCCAAAGAACTCTCCTGATCATTCTGCTTCTTCACAGGTTAAAGCTCTGTACGTCAAGAACATACCAGAGAATGTTACCACCGAACAACTGAAGGAACTATTCCGTCGCCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGAAAACGCGATTTTGGCTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACTGAGAAATATGAAATTGATGGACAAGTTCTTGAAGTTGTTCTTGCGAAGCCTCAAGCTGATAAAAAACCAGACGGAGGGTACGGCTACAATCCTGGACTGCATCCAAACCATCTTCCTCATCCTGCGTATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGGTGGTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTCCTTCAACAACCTGGTGTACAAGCGCCACCCAGCCGACCACGCAGAACTGATCGGAGTAATGGTCCAAGTGGGCAGCCAGGGCGAGGAGGTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG 1443 0.438 MSEGAEIDERVDLDEENFMEEIDDDVEEQIDDDGVDGGEDENVEGSVEEHEYEDSTADVGEKDQLPEAEKSDIATEFGDDDQKPSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRDLCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSREFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSNASFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQADKKPDGGYGYNPGLHPNHLPHPAYGNFSGNPYGSLGAGYGVGGGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQAPPSRPRRTDRSNGPSGQPGRGGSGNDEGNRSRRYRPY 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00037 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Vium6403g00037 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Vium6403g00037 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Vium6403g00037 480 MobiDBLite consensus disorder prediction 8 48 - -
Vium6403g00037 480 MobiDBLite consensus disorder prediction 1 86 - -
Vium6403g00037 480 Gene3D - 269 407 IPR012677 -
Vium6403g00037 480 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 186 - -
Vium6403g00037 480 MobiDBLite consensus disorder prediction 448 467 - -
Vium6403g00037 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Vium6403g00037 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Vium6403g00037 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 469 - -
Vium6403g00037 480 MobiDBLite consensus disorder prediction 49 86 - -
Vium6403g00037 480 SUPERFAMILY RNA-binding domain, RBD 273 373 IPR035979 GO:0003676
Vium6403g00037 480 Gene3D - 11 186 IPR012677 -
Vium6403g00037 480 FunFam Heterogeneous nuclear ribonucleoprotein Q 271 362 - -
Vium6403g00037 480 CDD RRM_SF 108 180 - -
Vium6403g00037 480 Gene3D - 187 267 IPR012677 -
Vium6403g00037 480 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 267 - -
Vium6403g00037 480 SMART rrm1_1 282 354 IPR000504 GO:0003723
Vium6403g00037 480 SMART rrm1_1 187 264 IPR000504 GO:0003723
Vium6403g00037 480 SMART rrm1_1 107 180 IPR000504 GO:0003723
Vium6403g00037 480 SUPERFAMILY RNA-binding domain, RBD 103 270 IPR035979 GO:0003676
Vium6403g00037 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Vium6403g00037 480 MobiDBLite consensus disorder prediction 437 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00037 Vium-Chr6403 226157 231893 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00037 108 434 Eukaryotic Initiation Factors Gene Family AT1G71770 25.393 5.31e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00037 K13161 - gmx:100790907 846.269