Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00026 ATGGCACCTAATACCATTTTCTTGCTCTCCTTCACATCTTCCTCCTTACCCACACCCTTATTCAACCACCATCTCCACACCCAATTCAGATCTTCCCGCAAACCATTCGTTTCCTTTTCCAAGGCTACGACTTTCTCCTTCACCGCCTCGGCGGCCACGGTGGATAAAGGAAGGGTCGTTCACGGAGGACAAAACGCGGAGGAAGAAACGTTCAAGCAACCAAGACCAACCGAAGTCTACATCTGCAACCTTCCAAGAAGCTGTGACGTACAACATCTACTTCATATGTTCAACCCTCATGGAACCGTACTCTCTGCTCAGGTTTGCCGCAGTGAGGAGACTGGTGAGAGTAGAGGGAGTGCTTATGTCACAATGGCATCTATTGACTCCGCAAAAAAGGCAATTGAGGCATTGGATGCATCGGATGTTGGTGGGCGCGAAGTGCTGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGGAGGAGGAATCTTGACACGATGAATTCGTTACCCATGAGAACTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAAGTTTACCATGCCTGAAGACCTGAGGCAGCTTTTTGGTAGATTTGGTAATGTGACCAGTGTAAGGGTGTTGCAAGATACGAGACAAGGAAAACAAAGGGTTTATGCGTTTGTTTCCTATCTTTCAGAGAGAGAACGAAATGCTGCACTATCTCTCAATGGAACGGTGCTTTGTGGTCGAACACTAGTGATTAGAGAGCGTTTAAAGAGAGATGAATAA 786 0.4606 MAPNTIFLLSFTSSSLPTPLFNHHLHTQFRSSRKPFVSFSKATTFSFTASAATVDKGRVVHGGQNAEEETFKQPRPTEVYICNLPRSCDVQHLLHMFNPHGTVLSAQVCRSEETGESRGSAYVTMASIDSAKKAIEALDASDVGGREVLVRFSAEMNPKRRRNLDTMNSLPMRTIYYEGPHKLYVGNLSKFTMPEDLRQLFGRFGNVTSVRVLQDTRQGKQRVYAFVSYLSERERNAALSLNGTVLCGRTLVIRERLKRDE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00026 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Vium6403g00026 261 SUPERFAMILY RNA-binding domain, RBD 69 165 IPR035979 GO:0003676
Vium6403g00026 261 Gene3D - 48 161 IPR012677 -
Vium6403g00026 261 Gene3D - 162 254 IPR012677 -
Vium6403g00026 261 SMART rrm1_1 182 254 IPR000504 GO:0003723
Vium6403g00026 261 SMART rrm1_1 78 151 IPR000504 GO:0003723
Vium6403g00026 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 258 IPR000504 GO:0003723
Vium6403g00026 261 PANTHER OS02G0815200 PROTEIN 16 254 - -
Vium6403g00026 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Vium6403g00026 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 251 IPR000504 GO:0003723
Vium6403g00026 261 SUPERFAMILY RNA-binding domain, RBD 176 258 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00026 Vium-Chr6403 172604 174188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00026 79 261 Eukaryotic Initiation Factors Gene Family AT1G22760 29.348 1.70e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00026 - - pvu:PHAVU_009G258000g 438.343