Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00023 ATGGGTGAAGTGGCGGGTGAGAAGGGTGTGATGCAGACTCAGGAGGAACAGAGCAACAATGGCTCCATGGTTCGGTGGGAACGTTTTCTGCCTCGGATGGTGCTTCGGGTGTTGCTTGTGGAAGCTGATGATTCGACTCGACAGATCATTGCTGCGCTTCTCCGTAAATGCAGTTACAAAACAAAGCATCTGACACTAGATCTCATATTAACTGAGTGGATTTGCACATCAATATCTGGATTTTCACTTCTTAGTTTAATCATGGAGCATGACGTTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCACGATTCAGTTAGCATGGTGTTCAGATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTGTGGAGAAGGCATGTCGATATTTCACAGCTGAAAGAGTTCTTCAAATTTGAGACCGATATGGCACAATTAAGCATGACAACTCTACAAAATGTGAAAGGGATCAGATATCAGCATAATGACAAAGCTGGAGGTCAAGGATATGATTTTGGTGAAATGAGAAATCAGGATGAAGTTCTAAGAATAGAGTTGAGCAAAGCCAATCCTGCAATTAGTGTTGATATTCGTGGAAGCAGTGATGAATTGGAAGGTCCGTCTACTGGGGCCATTGACTTGATTGGTACATTCAAGACACTTCCAGAGAGATATTTTCCTGGAGGCTCGTACAAAGCTGTATTTGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATGGTAGTAGTAAATTGTTGCAGCCCCTTTGTCCAACACCATCAACTATCTCTGCAAAATTAACAAACGACACAGGACTCATCCTGCTGCTAGTGAGACTTGCTGATACTCGCCCTTTACATGATATCAACAACAATAACTTGTGTGTGTGTTACAACAAGCATAGGCTGCTACAAGTGATGGAAATACTATCTATACTCAGCCAAGGTAGCCAAGGACAACGCACTGAAAGTTCACTGATATTAGGTCACCTTAGTCATGATGGATACATAGGATTCAGATTCTCATCGCTACCAGCCAACGAGAGAGCAGCTTCTAACAAGTTTCGACTTAAGCGTAAAGACATATGCTATGAGAAAAAGGTACGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGGGTGAAAGGGCAATTTGTTCGCCAAGTAGACAGTAGTCATCCGGTATCAGATCTGGGTGGTGATTCCTGA 1275 0.4282 MGEVAGEKGVMQTQEEQSNNGSMVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKTKHLTLDLILTEWICTSISGFSLLSLIMEHDVCKNIPVIMMSSHDSVSMVFRCMLKGAADFLIKPVRKNELRNLWQHVWRRHVDISQLKEFFKFETDMAQLSMTTLQNVKGIRYQHNDKAGGQGYDFGEMRNQDEVLRIELSKANPAISVDIRGSSDELEGPSTGAIDLIGTFKTLPERYFPGGSYKAVFEERQILNHSNASAFSRYGSSKLLQPLCPTPSTISAKLTNDTGLILLLVRLADTRPLHDINNNNLCVCYNKHRLLQVMEILSILSQGSQGQRTESSLILGHLSHDGYIGFRFSSLPANERAASNKFRLKRKDICYEKKVRYQSRKRLAEQRPRVKGQFVRQVDSSHPVSDLGGDS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00023 424 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 169 IPR045279 GO:0009736
Vium6403g00023 424 Pfam Response regulator receiver domain 60 133 IPR001789 GO:0000160
Vium6403g00023 424 Gene3D - 33 173 - -
Vium6403g00023 424 Pfam CCT motif 371 410 IPR010402 GO:0005515
Vium6403g00023 424 ProSiteProfiles CCT domain profile. 368 410 IPR010402 GO:0005515
Vium6403g00023 424 ProSiteProfiles Response regulatory domain profile. 1 139 IPR001789 GO:0000160
Vium6403g00023 424 MobiDBLite consensus disorder prediction 395 424 - -
Vium6403g00023 424 SMART REC_2 35 135 IPR001789 GO:0000160
Vium6403g00023 424 SUPERFAMILY CheY-like 31 150 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00023 Vium-Chr6403 161246 165592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00023 342 415 Response Regulator Gene Family AT5G24470 55.952 3.76e-17 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vium6403g00023 Response_reg 5.1e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00023 K12130 K12128 ath:AT2G46790 230.335