Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00019 ATGGCTGAAATGTTAGAATCAAGTAGAAAAGCTGTGAATGGGAGAGAGGGGTATCTTAAAAGGGAAGAAGAAGAAGAAGATGAGTTGGCTTTTTGCATGGAAAAGACGGTTGCTTTTGTGGTTCCAATGGCTTTGAAAACATTGTCTGAGCTGAGGGTGTTTGATATCTTAGCCAAAGGTGGCAAACTCTGTGCGAATGAGATCGCAGTTGAGATAGGAAGCAAGAACCCTGAAGCTCCTGCAATGTTGGATCGTCTTCTTAGCCTTTTGGTGAGTCACTCTCTGCTATCTTGTTCTATCTCTCAACAAGAACAACACCCTCAGAAGTTCTACACCCTCTCTCCTGCTTCCAAATATTTTGTCACTGATCCTCAAGGTGCATCATTGGGATCCTCCGTCAAATTACTTCTGGACGACATCTTCTTGAAAAGCTGGGGCGAACTGAAAGGAGCAATCCTAGAAGGGGGTGTGGCATTCGACAGGGCCCATGGCATGCATGCCTTCGAATATCCACGTGTGGATCCCAGGTTTAACGAGGTTTTCAACAACGGTATGATAGGCCTCACCACTATAATTATGAAGAGGATTCTTGAGTTATACAACGGTTTTGAGCATGTCACCAGGCTCGTCGACGTTGGTGGAGGTTATGGAGTCAACCTCAAATTGATCAAATCCAAATACCCTCACATTCAGGCTATTAATTTTGACTTGCCTCATGTGGTGGAAAATGCCCCTCTCCATTCAGGTGTGGAGCATGTGGGAGGAGACATGTTTGAAAGCGTTCCTTCAGGAGATGCCATTTTTATGAAGTGGGTACTTCATGATTGGAGTGATGAACATTGCGTGAAGCTGTTGAAGAATTGCTACAAAGGGATTCCTGATGATGGAAAGGTTATTGTGGTGGACTCAATTGTGTCGATGGTGCCGGAGACAAGTGTTACTGCTAAGGGTGCTTTGGGATCTGATCTCATAATGATGACTCAAAACCCAGGAGGGAAAGAGCGAACACGTCAACAAATCATAGAATTGGCAGAAGCATCTGGGTTTAGTGGGATCAGATTCATATGCTCTGTATGTGGCAACTGGGTTATGGAATTCTACAAGTAA 1107 0.4453 MAEMLESSRKAVNGREGYLKREEEEEDELAFCMEKTVAFVVPMALKTLSELRVFDILAKGGKLCANEIAVEIGSKNPEAPAMLDRLLSLLVSHSLLSCSISQQEQHPQKFYTLSPASKYFVTDPQGASLGSSVKLLLDDIFLKSWGELKGAILEGGVAFDRAHGMHAFEYPRVDPRFNEVFNNGMIGLTTIIMKRILELYNGFEHVTRLVDVGGGYGVNLKLIKSKYPHIQAINFDLPHVVENAPLHSGVEHVGGDMFESVPSGDAIFMKWVLHDWSDEHCVKLLKNCYKGIPDDGKVIVVDSIVSMVPETSVTAKGALGSDLIMMTQNPGGKERTRQQIIELAEASGFSGIRFICSVCGNWVMEFYK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00019 368 Gene3D Vaccinia Virus protein VP39 122 368 IPR029063 -
Vium6403g00019 368 Gene3D - 12 120 IPR036388 -
Vium6403g00019 368 FunFam Caffeic acid 3-O-methyltransferase 13 120 - -
Vium6403g00019 368 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Vium6403g00019 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 368 IPR016461 GO:0008168
Vium6403g00019 368 FunFam Caffeic acid O-methyltransferase 121 368 - -
Vium6403g00019 368 PANTHER O-METHYLTRANSFERASE 38 366 IPR016461 GO:0008168
Vium6403g00019 368 Pfam Dimerisation domain 43 91 IPR012967 GO:0046983
Vium6403g00019 368 PIRSF O-mtase 11 368 IPR016461 GO:0008168
Vium6403g00019 368 SUPERFAMILY "Winged helix" DNA-binding domain 23 123 IPR036390 -
Vium6403g00019 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 367 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00019 Vium-Chr6403 147526 149066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00019 16 368 Monolignol Biosynthesis Gene Families AT5G54160 51.685 7.02e-131 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00019 K13066 - vun:114162418 488.804