Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00018 ATGGAAAACTTTCCAAAGTCAATGCCGAACGGCGAAGAGAAGAAGAAGGAAGCAGAAGGAAGAGAAGATGAAGAAAGCTTCTCGCGTGCCATGCAGCTTGTGAGCTCCGTGGTGCTACCGATGGCACTGCAATCGGCGACGGAGCTGGGTGTGTTTGAGGTGCTGAAAGAAGCGGGTGAAGGTGCTAAGCTCTCTGCAAAGGACATAGCATCCAAGATTTCCTGCACCAACCCAGAAGCAGCCTCAATGCTAGATCGTCTCCTCATTCTTCTTTCCTCTCACTCCATTCTTCACTCTTCTCTCGTTTCCGACAACCTTGTCCCTCCCACCTTTCACAGGCTCTACTCCATCACTCCCCTCGCCACATTCTTTGCTCGCAATTCTGATGGGGTTTCCTTGGGACCCTTGATGGCCTTGCTCCAAGACAAAATCTTCCTACACAGCTGGACTGAGCTGAAAGATGCAATTCGGGAGGGGGGTATTCCATTCAACAGGGTCTATGGCACCCATGCTTTTGAGTATCCAAGGTTGGACTCAAGGTTCAATAAAGTTTTCAACACAGCAATGATTAATCACACCACTTTGGTGATGAAGAGGGTTCTGGAATCCTACAAAGGTTTTGACGGCATAAAAAGGCTGGTGGATGTTGGTGGTGGTCTTGGGATCAACATTAACTTGATCACTTCAAAATACCCTCATATCCATGGCGTCAATTTCGACTTGCCTCACGTCATTCAAGATGCTCCTTCCTATCCTGGAGTGGAACACGTTGGGGGAGATATGTTTGAAAATGTGCCTAAAGGAGACGCCACATTTATGAAGTGGATACTTCATGATTGGAGTGATGAACAGTGTGTGAAGCTGTTGAAGAACTGCTATGATGCAATTCCTGATGATGGAAAGGTGATAGTAGTGGAAGCAGTTCTTCCAAAAACACCAGAGACTAATGATGCTTATAAGGTAGTTTCACAAATGGATGTTTTGATGATGACTCAAAACCCGGGAGGGAAAGAGCGATGTGAACAAGAGTTCATGGATTTGGCTACTGCAGCTGGATTTAGTGGCATCAGATATGAATGTCATGTCAACCTTTTCTGGGTTATGGAGTTCTTCAAGTAG 1119 0.462 MENFPKSMPNGEEKKKEAEGREDEESFSRAMQLVSSVVLPMALQSATELGVFEVLKEAGEGAKLSAKDIASKISCTNPEAASMLDRLLILLSSHSILHSSLVSDNLVPPTFHRLYSITPLATFFARNSDGVSLGPLMALLQDKIFLHSWTELKDAIREGGIPFNRVYGTHAFEYPRLDSRFNKVFNTAMINHTTLVMKRVLESYKGFDGIKRLVDVGGGLGININLITSKYPHIHGVNFDLPHVIQDAPSYPGVEHVGGDMFENVPKGDATFMKWILHDWSDEQCVKLLKNCYDAIPDDGKVIVVEAVLPKTPETNDAYKVVSQMDVLMMTQNPGGKERCEQEFMDLATAAGFSGIRYECHVNLFWVMEFFK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00018 372 Gene3D - 7 124 IPR036388 -
Vium6403g00018 372 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171
Vium6403g00018 372 SUPERFAMILY "Winged helix" DNA-binding domain 21 127 IPR036390 -
Vium6403g00018 372 PANTHER O-METHYLTRANSFERASE 30 357 IPR016461 GO:0008168
Vium6403g00018 372 FunFam Caffeic acid O-methyltransferase 125 372 - -
Vium6403g00018 372 PIRSF O-mtase 8 372 IPR016461 GO:0008168
Vium6403g00018 372 Gene3D Vaccinia Virus protein VP39 125 372 IPR029063 -
Vium6403g00018 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 372 IPR016461 GO:0008168
Vium6403g00018 372 MobiDBLite consensus disorder prediction 1 26 - -
Vium6403g00018 372 MobiDBLite consensus disorder prediction 7 26 - -
Vium6403g00018 372 FunFam Caffeic acid 3-O-methyltransferase 9 124 - -
Vium6403g00018 372 Pfam Dimerisation domain 41 91 IPR012967 GO:0046983
Vium6403g00018 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 370 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00018 Vium-Chr6403 134193 136933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00018 23 372 Monolignol Biosynthesis Gene Families AT5G54160 54.000 1.28e-140 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00018 K13066 - gmx:100803633 561.222