Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00017 ATGGACGCCTACTCCTCTGGAGAAGAAGTCGTTATTAAGACACGAAAACCATATACTATCACAAAGCAAAGAGAAAGATGGACCGAGGAGGAACATAATAGATTTCTGGAAGCCTTAAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGAGCACATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCACGCTCAGAAATTCTTTTCAAAGTTGGAGAAAGAGGCCTTTGTGAAGGGTGTTCCAGTAGGACAAGCTCTTGATATAGACATACCCCCTCCAAGGCCTAAAAGAAAACCAAGCAATCCTTATCCCAGGAAGATCAATGCTGCTGTCGCTGTCCCAAAGAATGGAAAGTCTCTCCTTTCATTTGCATCTTCACATGGTAAACTTGCACTGGACTTGGAGAAAGAACCACTTCCAGAGAAGCATTATCAGGAGGACCAAATGCCAACAACTGTAAAAGAAAATAACGACGAAAACAGCTCAAAAATATTTACCATTCTCCAGGAAGCAGCACCTGCCTCATCTGTATCACTGCCGCTCAGAAATCCAAGTCCCTTGAGGGAGTTTATACCCTCAATAAAAGAGGTAACAACTCTAGATGAAACAAATGAGTCTTTTATTACTGATGAGCTTCAAAATCACAAGTTAGAGTTAGATGACGGAGAGCACAAACAAGAGACTAATGCCACTTGTAAAGTCTCTAAGTCGGAGAATTCTGGTGCTTTGAAATTGGTTCAAACTGAGAAAACAGATGGGATGCAAGGAAATCAGAATTACCCGAGACATGTCGCTGTGCACGTTGTTGACGACAAGTTTAATGGGCAACCTAAGATTGTCACAAACTCTGCTGCATCAAACATAAGTGAAAGTCAAAACAACACAGCACGGTCCTCTCTTCATCAATCGTTTTCTCCTTGTCCTCCCTTCTTACAACACAATCAGGATGATTACCATTCATTTCTTCATATGTCCTCCACGTTTTCAAGTCTTGTTGTCTCTACCTTGCTGCAAAATCCTGCTGCCCATGCTGCTGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGCAGAAACTTCCGTAGATTCTCCCGTGTGCACTCCTCCTAGTGTGACAGCTATTACAGCAGCTACAGTTGCTGCCGCAACTGCATGGTGGGCTGCCCATGGTCTGCTTCCTTTGTGTACTCCACTTCATACTGCCTTTGCGTGTCCTCCTGCACCAGCGACTGCAGCTCCATCCATGACTCTCGGTCTATCACAGCACAAAAACCAACAAGGAGAGGTTAAGCCAGAAAATCCTCCTCCAGAACAATCGGAAGTTCTGCAAGCTCAACACTCAGCTTCCAAGTCACCAGCTGTTTCTTCATCAGAATCTGAGAAGAAGGGAGATACCAATGTAAATACTGCACCAAAGGCTACTAATGATGAGATGAACCAAGCGATTTCCGAGAATCCCGATTCCGACAAAATAAACGGTAGAAAACCTGTAGACCGTTCCTCGTGTGGTTCTAACACAACCTCTAGCAGTGAAGAGACTGAGATACTAGAGAAGGATGAGAAAGAAAAGGAAGAGCCAAACAAACCTGATACAAACCTTTTAGGTTCTGAGCCTAATAATCGCCGTAGTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGGCGGCTTGCCTTTCAGGCGCTATTCTCCAGGGAGGTGTTGCCACAAAGCTTTTCACCTCCTCATGATTTGATAAATGCAGATAATCAGATTCACAGCATCAACAAGCAAAACGAAAACTACAAAGATGAAGACCTTGAAACCAAAAAACACAGTCCTATTTGTGATGGGCTGCAGAAAAGTTTGTCATTTGTCAAAGATAATGATGAAGAGGAGGGATTGCTAACCATGGGTCTTGGACAAGGAAAGCTGAAGATTCGTCGAACAGGGTTTAAACCTTACAAAAGGTGTTCGGTAGAGGCAAAGGAAAACATGATCGGAACGGCCTGCAACCAAGGTGAAGAGAAAGGTCCAAAGAGAATACGCTTGAACGGGGAAGCTTCAACTTGA 2073 0.4399 MDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEAFVKGVPVGQALDIDIPPPRPKRKPSNPYPRKINAAVAVPKNGKSLLSFASSHGKLALDLEKEPLPEKHYQEDQMPTTVKENNDENSSKIFTILQEAAPASSVSLPLRNPSPLREFIPSIKEVTTLDETNESFITDELQNHKLELDDGEHKQETNATCKVSKSENSGALKLVQTEKTDGMQGNQNYPRHVAVHVVDDKFNGQPKIVTNSAASNISESQNNTARSSLHQSFSPCPPFLQHNQDDYHSFLHMSSTFSSLVVSTLLQNPAAHAAASFAATFWPYANAETSVDSPVCTPPSVTAITAATVAAATAWWAAHGLLPLCTPLHTAFACPPAPATAAPSMTLGLSQHKNQQGEVKPENPPPEQSEVLQAQHSASKSPAVSSSESEKKGDTNVNTAPKATNDEMNQAISENPDSDKINGRKPVDRSSCGSNTTSSSEETEILEKDEKEKEEPNKPDTNLLGSEPNNRRSRSISNLTDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDLINADNQIHSINKQNENYKDEDLETKKHSPICDGLQKSLSFVKDNDEEEGLLTMGLGQGKLKIRRTGFKPYKRCSVEAKENMIGTACNQGEEKGPKRIRLNGEAST 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00017 690 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Vium6403g00017 690 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Vium6403g00017 690 SMART sant 23 71 IPR001005 -
Vium6403g00017 690 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Vium6403g00017 690 Gene3D - 26 73 - -
Vium6403g00017 690 PANTHER SWI/SNF COMPLEX-RELATED 7 574 - -
Vium6403g00017 690 MobiDBLite consensus disorder prediction 514 532 - -
Vium6403g00017 690 Coils Coil 585 605 - -
Vium6403g00017 690 MobiDBLite consensus disorder prediction 671 690 - -
Vium6403g00017 690 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Vium6403g00017 690 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Vium6403g00017 690 MobiDBLite consensus disorder prediction 423 556 - -
Vium6403g00017 690 MobiDBLite consensus disorder prediction 534 555 - -
Vium6403g00017 690 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Vium6403g00017 690 CDD SANT 26 69 IPR001005 -
Vium6403g00017 690 MobiDBLite consensus disorder prediction 423 489 - -
Vium6403g00017 690 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00017 Vium-Chr6403 113900 125531 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium6403g00017 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00017 K12133 - gmx:778086 947.962