Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00016 ATGGACGCCTACTCCTCTGGAGAAGAAGTCGTTATTAAGACACGAAAACCATATACTATCACAAAGCAAAGAGAAAGATGGACCGAGGAGGAACATAATAGATTTCTGGAAGCCTTAAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGAGCACATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCACGCTCAGAAATTCTTTTCAAAGTTGGAGAAAGAGGCCTTTGTGAAGGGTGTTCCAGTAGGACAAGCTCTTGATATAGACATACCCCCTCCAAGGCCTAAAAGAAAACCAAGCAATCCTTATCCCAGGAAGATCAATGCTGCTGTCGCTGTCCCAAAGAATGGAAAGTCTCTCCTTTCATTTGCATCTTCACATGGTAAACTTGCACTGGACTTGGAGAAAGAACCACTTCCAGAGCATTATCAGGAGGACCAAATGCCAACAACTGTAAAAGAAAATAACGACGAAAACAGCTCAAAAATATTTACCATTCTCCAGGAAGCAGCACCTGCCTCATCTGTATCACTGCCGCTCAGAAATCCAAGTCCCTTGAGGGAGTTTATACCCTCAATAAAAGAGGTAACAACTCTAGATGAAACAAATGAGTCTTTTATTACTGATGAGCTTCAAAATCACAAGTTAGAGTTAGATGACGGAGAGCACAAACAAGAGACTAATGCCACTTGTAAAGTCTCTAAGTCGGAGAATTCTGGTGCTTTGAAATTGGTTCAAACTGAGAAAACAGATGGGATGCAAGGAAATCAGAATTACCCGAGACATGTCGCTGTGCACGTTGTTGACGACAAGTTTAATGGGCAACCTAAGATTGTCACAAACTCTGCTGCATCAAACATAAGTGAAAGTCAAAACAACACAGCACGGTCCTCTCTTCATCAATCGTTTTCTCCTTGTCCTCCCTTCTTACAACACAATCAGGATGATTACCATTCATTTCTTCATATGTCCTCCACGTTTTCAAGTCTTGTTGTCTCTACCTTGCTGCAAAATCCTGCTGCCCATGCTGCTGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGCAGAAACTTCCGTAGATTCTCCCGTGTGCACTCCTCCTAGTGTGACAGCTATTACAGCAGCTACAGTTGCTGCCGCAACTGCATGGTGGGCTGCCCATGGTCTGCTTCCTTTGTGTACTCCACTTCATACTGCCTTTGCGTGTCCTCCTGCACCAGCGACTGCAGCTCCATCCATGACTCTCGGTCTATCACAGCACAAAAACCAACAAGGAGAGGTTAAGCCAGAAAATCCTCCTCCAGAACAATCGGAAGTTCTGCAAGCTCAACACTCAGCTTCCAAGTCACCAGCTGTTTCTTCATCAGAATCTGAGAAGAAGGGAGATACCAATGTAAATACTGCACCAAAGGCTACTAATGATGAGATGAACCAAGCGATTTCCGAGAATCCCGATTCCGACAAAATAAACGGTAGAAAACCTGTAGACCGTTCCTCGTGTGGTTCTAACACAACCTCTAGCAGTGAAGAGACTGAGATACTAGAGAAGGATGAGAAAGAAAAGGAAGAGCCAAACAAACCTGATACAAACCTTTTAGGTTCTGAGCCTAATAATCGCCGTAGTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGGCGGCTTGCCTTTCAGGCGCTATTCTCCAGGGAGGTGTTGCCACAAAGCTTTTCACCTCCTCATGATTTGATAAATGCAGATAATCAGATTCACAGCATCAACAAGCAAAACGAAAACTACAAAGATGAAGACCTTGAAACCAAAAAACACAGTCCTATTTGTGATGGGCTGCAGAAAAGTTTGTCATTTGTCAAAGATAATGATGAAGAGGAGGGATTGCTAACCATGGGTCTTGGACAAGGAAAGCTGAAGATTCGTCGAACAGGGTTTAAACCTTACAAAAGGTGTTCGGTAGAGGCAAAGGAAAACATGATCGGAACGGCCTGCAACCAAGGTGAAGAGAAAGGTCCAAAGAGAATACGCTTGAACGGGGAAGCTTCAACTTGA 2070 0.4401 MDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEAFVKGVPVGQALDIDIPPPRPKRKPSNPYPRKINAAVAVPKNGKSLLSFASSHGKLALDLEKEPLPEHYQEDQMPTTVKENNDENSSKIFTILQEAAPASSVSLPLRNPSPLREFIPSIKEVTTLDETNESFITDELQNHKLELDDGEHKQETNATCKVSKSENSGALKLVQTEKTDGMQGNQNYPRHVAVHVVDDKFNGQPKIVTNSAASNISESQNNTARSSLHQSFSPCPPFLQHNQDDYHSFLHMSSTFSSLVVSTLLQNPAAHAAASFAATFWPYANAETSVDSPVCTPPSVTAITAATVAAATAWWAAHGLLPLCTPLHTAFACPPAPATAAPSMTLGLSQHKNQQGEVKPENPPPEQSEVLQAQHSASKSPAVSSSESEKKGDTNVNTAPKATNDEMNQAISENPDSDKINGRKPVDRSSCGSNTTSSSEETEILEKDEKEKEEPNKPDTNLLGSEPNNRRSRSISNLTDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDLINADNQIHSINKQNENYKDEDLETKKHSPICDGLQKSLSFVKDNDEEEGLLTMGLGQGKLKIRRTGFKPYKRCSVEAKENMIGTACNQGEEKGPKRIRLNGEAST 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00016 689 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Vium6403g00016 689 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Vium6403g00016 689 SMART sant 23 71 IPR001005 -
Vium6403g00016 689 Coils Coil 584 604 - -
Vium6403g00016 689 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Vium6403g00016 689 MobiDBLite consensus disorder prediction 670 689 - -
Vium6403g00016 689 Gene3D - 26 73 - -
Vium6403g00016 689 MobiDBLite consensus disorder prediction 422 555 - -
Vium6403g00016 689 MobiDBLite consensus disorder prediction 422 488 - -
Vium6403g00016 689 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Vium6403g00016 689 PANTHER SWI/SNF COMPLEX-RELATED 7 573 - -
Vium6403g00016 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Vium6403g00016 689 MobiDBLite consensus disorder prediction 513 531 - -
Vium6403g00016 689 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Vium6403g00016 689 CDD SANT 26 69 IPR001005 -
Vium6403g00016 689 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Vium6403g00016 689 MobiDBLite consensus disorder prediction 533 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00016 Vium-Chr6403 113900 125533 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium6403g00016 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00016 K12133 - gmx:778086 947.962