Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00015 ATGTCACCTATTCTTCTCCTCACTTTTCTTCTACTTCTTCTGTGCTTCCCATTTTCTTCTTCCTTACAACCCTCTTTGCCTCCAAACTCCTGCACTCAAACATGCGGGGACCTCCGTCTTCCTTTTCCATTCTATGTCAACTCTTCTTGTCAGTCGATTTCCACCGCTTTCCATCTCTCCTGCACGAATTCATCTACCCTTTTCCTCAGAATTGGCTCGGTGAGCTACAAAGTCTTGGAATTCTTCCCGGATGGCCTGCTGGTGGACTTTCCTGGCTCATCATCCTGTAGACAGTACAATGACTTGAATTCTTTTGACAGAAGCTTTGCAGGGAAGGACAACTTTGGAGTTTCGGTGGACAATGTTATTGGTCTCTATGACTGTGAGGATTCCTCTCTCTGCAAAGCAGATTGTGAAACTATTGACTTGCCCGGTTGTGATGGAAGGGGTGGAGGCTCCCTTGCCTGCTGCTATCCACTCTCCGACCATACCGTATGGCATGTTGGATATGGGTTTTCGGTGTTTTCTCAGTTTGGATGCAGGGGGGTTTCTAGTTGGGCCGTTTTGCGAGGCTCAACTTGGGGAAAACGGGGGGTCAAGTTGGAATGGGCACTGCCCAGAAACTCCTCTGACCAAGTTTGTGCAAGGAATGCTGACATGATCAATGCTACATCAATCGAAGGAGGAGTGAGATGTGCCTGTCAAAATGGATATATCGGTGATGGTTTTGCTAATGGAACTGGATGTTTGCAGGCTTGCATAAAGGACGGAAAGGAAGCATATGGAAGTGACTGCAACATCAAAAGACAAGATCAGAGGAAATTTGTTATCATTGCCGGAATCATTGGCCCAGTTCTGATCGTTGCCTCCCTGGTTGCTCTATTTTATCTTCTTAAAAGGCCAGCAAAACCGGGGATGTTTGACACGGAGCAGGCTTACTATCAAAACATTTCAATCCCCAAAGCTTGTAAAACTCGACTGTTCAGCCTCCACGAGCTAGAGGAAGCCACTAAAGGTTTTGAAGAGGTTAAAAAACTTATGCATGCCAATAATGGGACAATTTTCGCTGGAGTTTTGAGGGATGGATCTCACATAGCTGTCCACAAATTACAATGTGAGAAGAAAGACTTGATTCAAGTTCTGTCACAGATCGAAGTTCTGTCCTCTACTGTGCATAGAAACATGGCCCGCATTCTTGGTTGCTGTATTGAATCTGGCAACACTCTAGTAGTTTATGAGTTTCCTTCCAATGGTACTCTGGAGGAACATTTACATCAAAGCAAAGGACAACAACTACGTTTAGATTGGTACAGGAGATTGACTATCGCTGCAGAAACAGCTAGCATTCTTGCATTCCTACACTACGAGAACTCTCCTCCCATATTTCACCATAACCTTAAATCTGCATGCATCTTCCTTGATGATGATTATTCTGTCAAGATTGCAGGATTTGGTCTGCTCAACTCCAATTTTTACTATGGTTCTCACTTACACAAGAACCACGAAGGCTTTGGCATCTGCAAAAATGATGTCTATGACATGGGTGTGTTGCTTCTTGAAATCATCTCAGGCTCAAATCGCTTGGATTTACCAAGTTCAGCCTTGCAGCATATAAGGGCTGGAAAATTTGAAGAAATTTTTGACCCTTTTCTTTGCTATGATGAACAACCACAGTATCGGCAAGAGCAAATGCAGATCATTGCTGATCTTGCCACAAGATGCCTCTTATTTGGTGTTGATGGAAGGTTGGGAATGGTTGATGTTGTGAGGGAGTTAGTACACTTGACTAAAGAAAGTCTTGATGGAGGAATTAGCAAAGGACCTGCACTGGAAGAGACATTCTCAAATTCAAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGAATGTCCCTTGA 1902 0.439 MSPILLLTFLLLLLCFPFSSSLQPSLPPNSCTQTCGDLRLPFPFYVNSSCQSISTAFHLSCTNSSTLFLRIGSVSYKVLEFFPDGLLVDFPGSSSCRQYNDLNSFDRSFAGKDNFGVSVDNVIGLYDCEDSSLCKADCETIDLPGCDGRGGGSLACCYPLSDHTVWHVGYGFSVFSQFGCRGVSSWAVLRGSTWGKRGVKLEWALPRNSSDQVCARNADMINATSIEGGVRCACQNGYIGDGFANGTGCLQACIKDGKEAYGSDCNIKRQDQRKFVIIAGIIGPVLIVASLVALFYLLKRPAKPGMFDTEQAYYQNISIPKACKTRLFSLHELEEATKGFEEVKKLMHANNGTIFAGVLRDGSHIAVHKLQCEKKDLIQVLSQIEVLSSTVHRNMARILGCCIESGNTLVVYEFPSNGTLEEHLHQSKGQQLRLDWYRRLTIAAETASILAFLHYENSPPIFHHNLKSACIFLDDDYSVKIAGFGLLNSNFYYGSHLHKNHEGFGICKNDVYDMGVLLLEIISGSNRLDLPSSALQHIRAGKFEEIFDPFLCYDEQPQYRQEQMQIIADLATRCLLFGVDGRLGMVDVVRELVHLTKESLDGGISKGPALEETFSNSSLLQMISMSPDSMNVP 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00015 633 FunFam Putative WAK-related receptor-like protein kinase family protein 416 606 - -
Vium6403g00015 633 Gene3D Laminin 212 245 - -
Vium6403g00015 633 ProSiteProfiles Protein kinase domain profile. 340 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00015 633 Gene3D Phosphorylase Kinase; domain 1 307 414 - -
Vium6403g00015 633 Pfam Wall-associated receptor kinase galacturonan-binding 31 81 IPR025287 GO:0030247
Vium6403g00015 633 Pfam Protein tyrosine and serine/threonine kinase 343 490 IPR001245 GO:0004672|GO:0006468
Vium6403g00015 633 Gene3D Transferase(Phosphotransferase) domain 1 416 603 - -
Vium6403g00015 633 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 595 IPR045274 GO:0007166
Vium6403g00015 633 FunFam probably inactive receptor-like protein kinase At2g46850 312 414 - -
Vium6403g00015 633 SUPERFAMILY Protein kinase-like (PK-like) 322 592 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00015 Vium-Chr6403 104207 106877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00015 31 595 Receptor kinase-like Gene Family AT2G23450 28.974 6.94e-59 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium6403g00015 PK_Tyr_Ser-Thr 1.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00015 - - vra:106760020 1219.91