Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00009 ATGGACTTGATACAACAAGTTAAAGGCACTTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGTGACAGAGATTATTGGTATCACAAGAGAAGCAGAAAGCAGCAGGTTACACCACCAAGATGCCGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGAGTTGTCACTGGGGAGCAGCAAGGAAGAGGAAGGGGAGGGCAATTTGCAAGGCGGAGGAGGAGGAGGAGGAGGAGGACCGCTTCATCATCATCATCAGCACCATCATCACCAACAGCATGAACATCATCATCATCATGACGGTCACGGAACTTGTTCAAACGCCAAGGAAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGCGATGTGGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGATTCGTCGTCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGATATTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCAGGTGACATTGTTTCCTTCCAGCGTGGCCTTGGAGATATGTATAGACATAGGTTGTACATAGATTGGAGGAGAAGGACCGATCACGGCCATCCTCCCTCTGATCCCTCCGCCTCCCCTTTGTTTCTTCCCTCTATCAGATGGTACTCCCTTCCCGCCACCTCCCCCATCGTTCCACCCCGCTACCACCACGATCATCACTTTCACCATCTCAATTACAACAACCTCTTCACTTTCCAGCACCAACACCAGTACCTTGGTCATGCTCATGGTGCTGCCACTTCCGCCGCCGCCGCCGCCCATCATCACAACAACTACGGCGAGCATAATTCGGGATCTGGGACTGGCTCACTCTATTACCTCAGGTCCTCCATGCCAATGGGTGGTGGTGCTGATCAAAACTTGGCAGGCAGAGGGAATAGCATTGTGCCCATGATCATCGATTCGGTGCCGGTGAACGTGGGTCATCATAACCATCGGCATGGGCACGGTGGCATGTCGAGTGGCGGAGGTAGTTCAACCACAAGCAGTGGAAAACGACTGAGGCTATTTGGGGTGAACATGGAGTGTGCCTCTTCGGGGGAAGATTCGAAAGGCCTGTCTTTGGGTTCGGCAGCGCATGTGACAGTGGGAAATTCACTTCCTTCTTCTTCGTCACTCCAGCAACGGTTGAGGATGCCCCATGAAGACCCCCTTTCTTCTTCAGCAAGGTTCGGTGATCACAAAGGCGGAAGCGGGACTTCTCTGCTGTTTGATTTGGATCCCTCATTGCAGTATCATCAGTAG 1377 0.52 MDLIQQVKGTYSDSREEEEEEEVTEIIGITREAESSRLHHQDAASNFGKKLDLMELSLGSSKEEEGEGNLQGGGGGGGGGPLHHHHQHHHHQQHEHHHHHDGHGTCSNAKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDMYRHRLYIDWRRRTDHGHPPSDPSASPLFLPSIRWYSLPATSPIVPPRYHHDHHFHHLNYNNLFTFQHQHQYLGHAHGAATSAAAAAHHHNNYGEHNSGSGTGSLYYLRSSMPMGGGADQNLAGRGNSIVPMIIDSVPVNVGHHNHRHGHGGMSSGGGSSTTSSGKRLRLFGVNMECASSGEDSKGLSLGSAAHVTVGNSLPSSSSLQQRLRMPHEDPLSSSARFGDHKGGSGTSLLFDLDPSLQYHQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00009 458 Gene3D - 112 229 IPR015300 -
Vium6403g00009 458 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 84 395 IPR044800 GO:0003700
Vium6403g00009 458 MobiDBLite consensus disorder prediction 1 22 - -
Vium6403g00009 458 SUPERFAMILY DNA-binding pseudobarrel domain 116 221 IPR015300 -
Vium6403g00009 458 SMART B3_2 119 224 IPR003340 GO:0003677
Vium6403g00009 458 MobiDBLite consensus disorder prediction 82 98 - -
Vium6403g00009 458 CDD B3_DNA 117 206 IPR003340 GO:0003677
Vium6403g00009 458 MobiDBLite consensus disorder prediction 409 458 - -
Vium6403g00009 458 ProSiteProfiles B3 DNA-binding domain profile. 119 224 IPR003340 GO:0003677
Vium6403g00009 458 MobiDBLite consensus disorder prediction 355 375 - -
Vium6403g00009 458 Pfam B3 DNA binding domain 119 223 IPR003340 GO:0003677
Vium6403g00009 458 MobiDBLite consensus disorder prediction 60 106 - -
Vium6403g00009 458 FunFam B3 domain-containing protein 112 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00009 Vium-Chr6403 58268 61501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00009 109 391 RAV Transcription Factor Family AT2G46870 51.211 1.49e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium6403g00009 B3 3.9e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00009 K09287 - gmx:100812161 526.554