Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00008 ATGGCTTCTGCTTGTGCCTCCTCTGCCATTGCTGCTGTTTCCATCTCCACGCCAAGTTCCCAGAAGAATGGATCAGTGTTGGGAACCCCCAAAGCTTCTTTTCTTGGTGGAAGGAAATTGAGGGTGAACAAATACACAGCAGCAGTTGGAGTACGATCCACCACTACAGTGTGTGCTGTAGCAGACCCTGACAGGCCCCTATGGTTTCCCGGCAGCACCCCTCCTCCATGGCTTGACGGCAGTCTCCCTGGAGACTTTGGCTTTGACCCTCTTGGTCTTGGATCTGATCCGGAGAGTCTGAGATGGAATGTTCAGGCAGAGCTAGTGCACTGCAGATGGGCAATGTTGGGTGCTGCTGGGATTTTCATTCCAGAATTCCTGACAAAGATTGGTGTTTTAAACACACCCTCATGGTACACAGCTGGAGAACTTGAATACTTCACAGACACCACTACCCTCTTCATTGTTGAGCTCTTTTTCATTGGGTGGGCTGAGGGTAGAAGGTGGGCTGACATAATCAAGCCAGGGTGTGTGAACACTGACCCCATCTTTCCCAACAACAAGCTCACAGGAACTGATGTTGGTTACCCAGGTGGGCTTTGGTTTGACCCTCTTGGATGGGGAAGTGGTTCTCCCGAGAAGATCAAGGAGTTGAGAACTAAGGAGATCAAGAATGGGAGATTGGCCATGTTGGCTGTGATGGGTGCATGGTTCCAGCACATATACACCGGCACTGGTCCTATTGACAACCTCTTTGCCCACCTTGCAGATCCTGGCCATGCTACCATTTTTGCTGCTTTCACCCCTAAGTGA 813 0.5068 MASACASSAIAAVSISTPSSQKNGSVLGTPKASFLGGRKLRVNKYTAAVGVRSTTTVCAVADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00008 270 FunFam Chlorophyll a-b binding protein, chloroplastic 75 260 - -
Vium6403g00008 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 24 268 IPR001344 GO:0009765|GO:0016020
Vium6403g00008 270 Gene3D Chlorophyll a/b binding protein domain 75 260 - -
Vium6403g00008 270 SUPERFAMILY Chlorophyll a-b binding protein 60 268 - -
Vium6403g00008 270 Pfam Chlorophyll A-B binding protein 74 240 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00008 Vium-Chr6403 45211 46708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00008 52 270 Chloroplast and Mitochondria Gene Families AT3G61470 90.000 8.20e-148 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00008 K08908 - gmx:100784089 532.332