Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00005 ATGAGAGCTCCCACTCCCATAGACAGACCAACCCCATCAACATCAACATCAACAACGTCCACACCACCCTCTTCCATCTACATGATTCCCAAGTTAATGGTCTTTGTCACTCTCCTGTTTCTTCTTCTCTCTGGGCTCCTTCTTCCTGTTCAAGCCGCCTCCTGTAACCAACTTGATAGAGACTCACTCTTGGCCTTCTCCAGGAACATATCCACTCCTTCTCCTCTCAATTGGTCTGCTTCTGTTGATTGTTGTCTGTGGGAAGGCATTAAGTGTGATGAGAATTTCAGAGTCATACATCTATTGCTACCATCCAGGGGTCTCGCCGGCTTCATCTTCCCATCTCTCATAAATCTCACTGCTCTCTCCCTTCTTGATCTATCCCAGAACTGCTTATCCGGTAATCTCCCAGACCAATTTTTCTCACTTCTTAATCACCTGCAGATTCTTGATTTAAGCTACAATCGTCTCTCTGGTGAATTGCCACCCTTTGTTGCTAATACCAGTGGCAATACCATTCGGGAGCTTGATCTGTCCAGTAATTTATTCCACGGAAAACTACCACTCTCTCTCCTTCAGCACCTGGCAGATGCAATCGCTGCAGGGAGTTTGACATCTTTTAACGTCAGTAACAACAGCTTCACTGGTCAAATTCCCACTTCTCTCCTCTGCAATAACCACAGTAGCTCATCCTCTCTTAGATTCTTGGATTATTCCTCCAATGATTTCTCTGGCATGATTCAGCCAGGACTAGGAGCATGTTCCAAGCTGGAGAGATTTCGAGCTGGCTCCAATTCCCTATCCGGGCCCCTTCCTGGTGATATTTTCGATGCTGTTTCTCTCAAAGAAATCTCCTTGCCCCTCAATAAACTCGGTGGAACCCTTGGAGAGAGCATTGTTAACCTTGTCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTCACCGGGCCCATTCCCTCTGATATTGGTAAGCTCTCCAAATTGGAACGTTTACTTCTTCATGCCAACAAAATAAATGGCACTCTGCCCCCATCTCTAATGGACTGTGTCAATCTTGTCATGTTGGATGTAAGGCTCAACTTGTTGGAGGGAAGCCTCTCGGCATTGAATTTCTCCGGACTCCTCAGACTCTCAGCACTTGACCTCGGCAACAATAGTTTTACTGGTATTATACCACCAACCATGTATGCATGCAAATCCCTTAAAGCAGTGAGACTTGCATCTAATTATTTTGAGGGACAGATCTCACCTGATATACTTGGACTTCAGTCTCTGGCTTTCCTATCAATTTCTACCAACAACCTCAGTAATATCACTGGAGCTCTGAGGCTGCTTATGGGACTCAAGAACCTTAGCACTCTTATGCTCTCCCAGAATTTTTTCAATGAAATGATGCCAGATGATGTCAACATAACAAACCCAGATGGATTCCAAAAGATCCAAGTTCTGGGTTTAGGCGGTTGTAATTTCACAGGTCAAGTACCACACTGGCTTTATAATCTGAAGAAGCTCGAGGTCTTGGATTTGTCCTATAATCAAATTAGTGGTTCAATTCCTCCTTGGTTGCACACGCTTCCCGAGCTTTTCTACGTAGACTTGTCTTTTAACCTCCTCACAGGAATGTTTCCAGCTGAGCTCACAACGCTTCCAGCACTAACATCACAACAGACCTATGACAAAGTAGAGAGGACTTACCTGGAGTTACCCGTGTTTGCTAATGCCAACAATGTCTCTCAGATGCAATACAATCAGATTTCCAACCTACCACCAGCAATATATCTGGGAAACAATAGCCTCAACGGCAGTATCCCGGTAGAGATTGGCAAACTCAGAGTCCTTCATCAGCTGGACCTTAGTAACAACAAATTCTCTGGCAATATCCCAGCGGAAATTTCTAACTTGATTAACTTAGAGAAACTATCCCTCTCAGGAAACCAACTTTCCGGTGAAATTCCCGTTTCACTCAAAAGCTTGCATTTTTTGTCTGCTTTCAGTGTAGCATACAATAATCTTGAAGGACCGGTACCCACAGGTGGCCAATTTGATACTTTCTCCTTTTCTAGCTTCGAAGGAAACCCACAGTTGTGTGGTTCAGTTGTTCGGCGGTCTTGTCTTCCTCAACAGAGTACTACTGCTCGTAGTCACAGCTCAAGCAAAAAGCTGATAATTGGATTTGCCATTGCAGCCAGTTTTGGCCTTGTTTCCTTCGTTTCAGTGTTGATAGTGTGGGTAATATCCAAGAGGAGGATCAATCCAGGTGGAGAACCTGACAAGATTGAAGTAGAATCAATTTCTATCAGCTCTTACAGTGGGGTTCATCCCGAGGTTGACAAAGAGGCCAGCCAAGTGGTACTGTTCCCTAATAAAACAAGTGAAATCAAGGACCTTACCATAGTTGAAATATTAAAAGCTACAGAAAACTTCAGTCAGGCAAACATAATAGGATGTGGAGGTTTTGGTTTGGTGTATAAAGCAACATTACCAAATGGAACTGCTCTGGCCATCAAGAAACTTTCAGGAGAATTAGGTCTAATGGAAAGGGAATTTAAAGCAGAGGTAGAGGCTTTGTCGACAGCACAGCATGAGAATGTGGTTGCCTTGCAAGGCTACTGTGTGCATGAGGGTGTTCGGCTTCTGATATACACTTACATGGAAAATGGAAGTCTGGATTACTGGCTGCATGAGAAGGCAGATGGTCCATCTCAGATTGATTGGCCTACCCGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCACCAAATATGTGAACCACATATAGTGCATCGTGATATAAAGTCAAGCAATATACTTCTTGATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGGCTGGCCAGGCTCATTCTTCCTTATCACACTCACGTTACAACTGAACTTGTAGGCACATTAGGATACATACCCCCAGAGTATGGACAAGCATGGGTGGCAACTCTGAGAGGAGACGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTAACGGGGAGGAGGCCTGTTGATGTAAGCAAGCCAAAAATGTCAAGGGAGTTAGTTGCCTGGGTTCAACAAATGAGGAGTGAAGGAAAACAAGATCAAGTCTTTGATCCATTTCTGAGAGGCAAGGGCTTTGAAGAAGAGATGCTCAAGGTTCTTGATGTAGCCTGCATGTGTGTCAGCCATAATCCTTTCAAGAGACCATGCATCCCAGAAGTTGTTGAATGGCTGAGGAATGTAGGATTATCCAACCACCATACGAATAAAGACTAG 3282 0.443 MRAPTPIDRPTPSTSTSTTSTPPSSIYMIPKLMVFVTLLFLLLSGLLLPVQAASCNQLDRDSLLAFSRNISTPSPLNWSASVDCCLWEGIKCDENFRVIHLLLPSRGLAGFIFPSLINLTALSLLDLSQNCLSGNLPDQFFSLLNHLQILDLSYNRLSGELPPFVANTSGNTIRELDLSSNLFHGKLPLSLLQHLADAIAAGSLTSFNVSNNSFTGQIPTSLLCNNHSSSSSLRFLDYSSNDFSGMIQPGLGACSKLERFRAGSNSLSGPLPGDIFDAVSLKEISLPLNKLGGTLGESIVNLVNLTVLELYSNNFTGPIPSDIGKLSKLERLLLHANKINGTLPPSLMDCVNLVMLDVRLNLLEGSLSALNFSGLLRLSALDLGNNSFTGIIPPTMYACKSLKAVRLASNYFEGQISPDILGLQSLAFLSISTNNLSNITGALRLLMGLKNLSTLMLSQNFFNEMMPDDVNITNPDGFQKIQVLGLGGCNFTGQVPHWLYNLKKLEVLDLSYNQISGSIPPWLHTLPELFYVDLSFNLLTGMFPAELTTLPALTSQQTYDKVERTYLELPVFANANNVSQMQYNQISNLPPAIYLGNNSLNGSIPVEIGKLRVLHQLDLSNNKFSGNIPAEISNLINLEKLSLSGNQLSGEIPVSLKSLHFLSAFSVAYNNLEGPVPTGGQFDTFSFSSFEGNPQLCGSVVRRSCLPQQSTTARSHSSSKKLIIGFAIAASFGLVSFVSVLIVWVISKRRINPGGEPDKIEVESISISSYSGVHPEVDKEASQVVLFPNKTSEIKDLTIVEILKATENFSQANIIGCGGFGLVYKATLPNGTALAIKKLSGELGLMEREFKAEVEALSTAQHENVVALQGYCVHEGVRLLIYTYMENGSLDYWLHEKADGPSQIDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLARLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVSKPKMSRELVAWVQQMRSEGKQDQVFDPFLRGKGFEEEMLKVLDVACMCVSHNPFKRPCIPEVVEWLRNVGLSNHHTNKD 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00005 1093 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 272 367 - -
Vium6403g00005 1093 Gene3D Transferase(Phosphotransferase) domain 1 885 1092 - -
Vium6403g00005 1093 FunFam Leucine-rich repeat receptor-like kinase 59 172 - -
Vium6403g00005 1093 Gene3D Ribonuclease Inhibitor 199 274 IPR032675 -
Vium6403g00005 1093 ProSiteProfiles Protein kinase domain profile. 809 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00005 1093 MobiDBLite consensus disorder prediction 8 22 - -
Vium6403g00005 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 931 943 IPR008271 GO:0004672|GO:0006468
Vium6403g00005 1093 Gene3D Ribonuclease Inhibitor 370 713 IPR032675 -
Vium6403g00005 1093 FunFam Tyrosine-sulfated glycopeptide receptor 1 372 710 - -
Vium6403g00005 1093 Gene3D Phosphorylase Kinase; domain 1 771 884 - -
Vium6403g00005 1093 Pfam Leucine rich repeat N-terminal domain 59 93 IPR013210 -
Vium6403g00005 1093 PRINTS Leucine-rich repeat signature 502 515 - -
Vium6403g00005 1093 PRINTS Leucine-rich repeat signature 147 160 - -
Vium6403g00005 1093 SMART serkin_6 809 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00005 1093 Pfam Protein kinase domain 810 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00005 1093 ProSitePatterns Protein kinases ATP-binding region signature. 815 838 IPR017441 GO:0005524
Vium6403g00005 1093 ProSiteProfiles Leucine-rich repeat profile. 504 527 IPR001611 GO:0005515
Vium6403g00005 1093 Pfam Leucine rich repeat 481 539 IPR001611 GO:0005515
Vium6403g00005 1093 Gene3D Ribonuclease Inhibitor 56 198 IPR032675 -
Vium6403g00005 1093 Pfam Leucine Rich Repeat 637 659 IPR001611 GO:0005515
Vium6403g00005 1093 FunFam Leucine-rich repeat receptor-like protein kinase 885 1091 - -
Vium6403g00005 1093 SUPERFAMILY Protein kinase-like (PK-like) 788 1080 IPR011009 -
Vium6403g00005 1093 SUPERFAMILY L domain-like 235 694 - -
Vium6403g00005 1093 Gene3D Ribonuclease Inhibitor 275 369 IPR032675 -
Vium6403g00005 1093 MobiDBLite consensus disorder prediction 1 22 - -
Vium6403g00005 1093 SUPERFAMILY L domain-like 78 315 - -
Vium6403g00005 1093 SMART LRR_typ_2 302 325 IPR003591 -
Vium6403g00005 1093 SMART LRR_typ_2 423 445 IPR003591 -
Vium6403g00005 1093 SMART LRR_typ_2 611 634 IPR003591 -
Vium6403g00005 1093 SMART LRR_typ_2 449 472 IPR003591 -
Vium6403g00005 1093 SMART LRR_typ_2 119 143 IPR003591 -
Vium6403g00005 1093 SMART LRR_typ_2 326 350 IPR003591 -
Vium6403g00005 1093 SMART LRR_typ_2 375 399 IPR003591 -
Vium6403g00005 1093 SMART LRR_typ_2 502 526 IPR003591 -
Vium6403g00005 1093 SMART LRR_typ_2 144 168 IPR003591 -
Vium6403g00005 1093 SMART LRR_typ_2 635 659 IPR003591 -
Vium6403g00005 1093 FunFam Leucine-rich repeat receptor protein kinase MSP1 774 884 - -
Vium6403g00005 1093 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 100 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00005 Vium-Chr6403 27774 31897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00005 33 743 Miscellaneous Gene Families AT1G17240 50.763 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vium6403g00005 Pkinase 2.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00005 - - gmx:100782574 1842.01