Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00003 ATGGCTGAGGAACTGGATAAACCGCTGCTTGATCCTGAGAATTTCAACCGAGATGGCATTGATTTGGAGCGTATACCATTAGAAGAAGTATTTGAACAGTTGAGAACATCACGAAGAGGACTTTCATCTGACGATGCCGAAGCTCGAATAGAGATATTTGGCCCAAACAAACTTGAAGAGAAGAAAGAGAATAAAATATTGAAATTTCTTGGTTTTATGTGGAATCCTTTATCATGGGTTATGGAAGCAGCAGCACTGATGGCGATTATCCTTGCTAATGGTGGAGGGGAAGGTCCTGATTGGCAAGACTTTATAGGGATTATATGCCTACTGGTAATAAACTCAACTATTAGTTTTATAGAAGAAAATAATGCAGGTAATGCTGCAGCAGCATTAATGGCACGTTTAGCTCCTAAAACAAGGGTTCTCAGAGACGGGCAGTGGCAAGAGCAAGATGCAGCAATTTTAGTACCTGGGGATATAATTAGCATAAAATTGGGAGATATAGTTCCAGCTGATGCTCGCTTGCTAGAAGGGGATCCTCTAAAAATTGATCAGTCAGCCCTTACTGGAGAATCTCTACCTGTCACGAAAAGAACTGGTGACGAGGTCTTTTCAGGTTCGACATGTAAACATGGAGAGATTGAGGCTGTAGTGATAGCAACAGGAGTTCACTCCTTTTTTGGAAAGGCAGCATACCTGGTTGATAGTACTGAAGTTGTTGGACATTTTCAGAAGGTCCTTACCTCAATTGGTAACTTCTGCATTTGCTCTATAGCTATAGGGATAATTTTTGAAATAATTATAATGTTCCCAGTGGAGCATCGATCATACAGGGATGGAATCAACAATCTTCTTGTTCTCCTAATTGGAGGAATACCCATCGCTATGCCAACAGTCTTATCTGTAACACTTGCAATTGGCTCTCACCGTCTTTCTCAGCAGGGAGCCATAACTAAAAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTGCTCTGCAGTGACAAAACTGGAACTCTTACACTGAATCGCCTGACTGTTGATAAAAACCTTATTGAGGTTTTTAATAGAAATATGGACAAAGATACGGTTGTTCTACTAGCAGCCAGAGCAGCTAGGCTGGAAAACCAGGATGCCATTGATACTGCCGTAGTTAATATGCTAGCTGATCCAATGGAGGCACGTGCAAACATCACTGAAGTTCATTTTCTACCATTCAATCCTGTAGATAAACGTACAGCTATAACGTATATTGATTCTGATGGCAATTTTTATAGGGCCACTAAAGGAGCTCCTGAACAGATTCTAGATTTGTGTCAAGAGAGAGATCAAATTGCCAGAAAAGTGCACGATATAATAGACAAATTTGCTGAAAGGGGATTGCGATCTCTTGCAGTTGCTTATCAGGAAGTTCCTGAAAAATCCAAGGATAGCCCTGGAGGTCCTTGGAATTTTTGTGGCTTGTTGCCTTTGTTTGATCCACCAAGACATGATAGTGCGGAAACCATCCGAAGAGCACTTAACCTTGGAGTCTGTGTAAAGATGATTACAGGTGATCAATTAGCCATTGCAAAGGAGACAGGCCGAAGACTTGGCATGGGAACAAACATGTACCCTTCTTCTTCTTTGTTAGGGCATGAAAAAGAAGAGCATGAAGCTCTCCCTGTAGATGAGCTCGTTGAAATGGCAGATGGATTTGCTGGTGTTTATCCTGAACACAAGTATGAAATAGTGAAAATTTTACAAGAAAAGAAACATGTTGTTGGGATGACCGGGGATGGAGTAAATGATGCCCCAGCATTGAAGAAAGCAGATATCGGAATAGCTGTGTCAGACGCTACAGATGCTGCAAGAAGTGCTGCTGATTTGGTCTTAACCGAGCCTGGGTTAAGTGTCATTGTTAGTGCTGTGTTAACAAGCAGAGCTATATTCCAAAGAATGAAAAATTATACAATATATGCTGTCTCCATCACCATAAGGATAGTGGTTGGTTTTACTCTCCTGGCATTAATTTGGGAGTATGATTTTCCACCCTTCATGGTCTTGATCATTGCAATACTAAATGATGGTACTATCATGACCATATCTAAAGACAGAGTGAAGCCATCCCCGACACCCGACAGTTGGAAGCTACCAGAGATATTTGCAACAGGAATAGTGATTGGAACTTATCTTGCTTTGGTCACTGTCCTATTCTATTGGGTAATAGTTGAGACCACTTTCTTTGAGACCCACTTCCATGTAACCTCATTATCTAGTGACAGCGAGAAAGTTTCATCAGCTGTATATCTGCAAGTTAGCATCATTAGCCAGGCTCTAATCTTTGTTACTCGAAGCTATGGATGGTCATTTCTAGAGAGACCCGGAGCTCTGCTGATGTGCGCCTTTGTAATAGCTCAACTGGTGGCGACCTTAATTGGTGTGTATGCAAATATCAGTTTTGCAAAGATTAGCGGAATTGGATGGGAATGGGCTGGTGTTATATGGTTGTACAGTTTGATCTTCTATGTACCATTGGACATCATTAAGTTCACAGTGCGTTATGCTTTGACTGGAGATGCCTGGAAACTCCTATTTGAAAGAAAGACTGCTTTTACATCAAAGAAAGACTATGGAAAAGAAGATAGGGCTGCAAAGTGGGTTCTTTCTCAGAGGACTCTACAAGGACTGCATCTCATGGCCGCCGGAGGCCTGGAGGTAAACGGAAGACGCTCTTCTATCATAGCTGAACAGGCCAGACGACGAGCTGAAATAGCCAGACTAGGGGAGTTGCACACTCTCAGAGGACATGTTGAGTCTGTTGTCAGACTCAAAAACTTACACCGCAATATCCAATCAGCTCATACAGTCTGA 2859 0.4197 MAEELDKPLLDPENFNRDGIDLERIPLEEVFEQLRTSRRGLSSDDAEARIEIFGPNKLEEKKENKILKFLGFMWNPLSWVMEAAALMAIILANGGGEGPDWQDFIGIICLLVINSTISFIEENNAGNAAAALMARLAPKTRVLRDGQWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAYLVDSTEVVGHFQKVLTSIGNFCICSIAIGIIFEIIIMFPVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDKNLIEVFNRNMDKDTVVLLAARAARLENQDAIDTAVVNMLADPMEARANITEVHFLPFNPVDKRTAITYIDSDGNFYRATKGAPEQILDLCQERDQIARKVHDIIDKFAERGLRSLAVAYQEVPEKSKDSPGGPWNFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGHEKEEHEALPVDELVEMADGFAGVYPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVSDATDAARSAADLVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVVGFTLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLALVTVLFYWVIVETTFFETHFHVTSLSSDSEKVSSAVYLQVSIISQALIFVTRSYGWSFLERPGALLMCAFVIAQLVATLIGVYANISFAKISGIGWEWAGVIWLYSLIFYVPLDIIKFTVRYALTGDAWKLLFERKTAFTSKKDYGKEDRAAKWVLSQRTLQGLHLMAAGGLEVNGRRSSIIAEQARRRAEIARLGELHTLRGHVESVVRLKNLHRNIQSAHTV 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00003 952 SMART Cation_ATPase_N_a_2 21 93 IPR004014 -
Vium6403g00003 952 ProSitePatterns E1-E2 ATPases phosphorylation site. 337 343 IPR018303 -
Vium6403g00003 952 Pfam E1-E2 ATPase 136 314 - -
Vium6403g00003 952 NCBIfam plasma-membrane proton-efflux P-type ATPase 40 811 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vium6403g00003 952 Gene3D - 905 952 - -
Vium6403g00003 952 NCBIfam HAD-IC family P-type ATPase 568 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium6403g00003 952 NCBIfam HAD-IC family P-type ATPase 107 356 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium6403g00003 952 FunFam Plasma membrane ATPase 487 641 - -
Vium6403g00003 952 Gene3D - 138 222 - -
Vium6403g00003 952 Pfam haloacid dehalogenase-like hydrolase 331 607 - -
Vium6403g00003 952 SFLD p-type atpase 317 645 IPR044492 -
Vium6403g00003 952 SFLD Haloacid Dehalogenase 317 645 - -
Vium6403g00003 952 FunFam Plasma membrane ATPase 138 222 - -
Vium6403g00003 952 SUPERFAMILY Calcium ATPase, transduction domain A 138 234 IPR008250 -
Vium6403g00003 952 Gene3D - 347 494 IPR023299 GO:0000166
Vium6403g00003 952 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium6403g00003 952 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium6403g00003 952 PRINTS H+-transporting ATPase (proton pump) signature 765 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium6403g00003 952 PRINTS H+-transporting ATPase (proton pump) signature 451 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium6403g00003 952 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium6403g00003 952 CDD P-type_ATPase_H 40 846 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vium6403g00003 952 FunFam ATPase 4 plasma membrane-type 581 820 - -
Vium6403g00003 952 FunFam Plasma membrane ATPase 347 494 - -
Vium6403g00003 952 Pfam Cation transporter/ATPase, N-terminus 25 87 IPR004014 -
Vium6403g00003 952 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 851 IPR023298 -
Vium6403g00003 952 Gene3D - 100 820 - -
Vium6403g00003 952 Gene3D - 332 630 IPR023214 -
Vium6403g00003 952 SUPERFAMILY HAD-like 331 640 IPR036412 -
Vium6403g00003 952 PANTHER CALCIUM-TRANSPORTING ATPASE 24 888 - -
Vium6403g00003 952 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Vium6403g00003 952 PRINTS P-type cation-transporting ATPase superfamily signature 185 199 - -
Vium6403g00003 952 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Vium6403g00003 952 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Vium6403g00003 952 PRINTS P-type cation-transporting ATPase superfamily signature 489 500 - -
Vium6403g00003 952 PRINTS P-type cation-transporting ATPase superfamily signature 511 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00003 Vium-Chr6403 12049 20533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00003 1 952 Primary Pumps ATPases AT1G17260 80.588 0.0 1548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00003 K01535 - gmx:100795836 1636.7