Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6403g00002 ATGGTGGAGTTTAGAAGGTTGTTACTGTTGCTGTGTATCACTTCCTGCATTCTTTGTTGGATGCCCAATGGTGCTACTTCTGCTACAGATCCAAATGATGCTACTGCTGTGAGACTTTTATTTCAAAATTTGAACTCACCATCCCAGCTTGGTTGGCCTGTTAATGGCGATGATCCATGTGGGCAACCTTGGAAAGGCATTTCTTGTTCAGGCAACCGTGTTACAGAGATTAAGTTATCTAATCTTGGACTGACTGGGTCGTTGCCATATTCATTGCTATCATTGTGTGACCTTGTAAACTTTTGTAGAGACATGAGTGGCAACAGTCTTGGCGGCAGCATACCATACCAGCTCCCTCCATATGTGCAGCGATTAAATCTTGCTTATAATAACATCACAGGGACTGTTCCTTACTCTATTTCAAACTTGAACGCTCTTACAGACCTGAATCTTGGTCACAATCAGCTCCAGCAAGGACTGGCTGTTAACTTTCTTAATCTTTCTGCCCTCTCTACATTGGATCTCTCGTTCAATTCTCTAATTGGTGACCTCCCTCAGACCATGAGCTCACTTTCACACATAACAACCTTGAATCTGCAAAACAATCAGTTTACGGGCACTATTGATGTCCTTGCTAATCTTCCTCTGGATAATCTGAATGTGGAGAACAATAATTTTACTGGATGGATACCCGACCAGTTGAAGGATATAAACCTACAGAGCGGTGGTAATGGATGGAGCTCCGGACCTGCACCCCCACCTCCTCCTGGTACACCTCCCGTACCTAAAAGGAACAAACACCACCAGTCTGGAGGGGGAAGCAACACTACCCCAGATGTCAGTGACAGCAGCAGCAGTTCAGTTGACACGGGCAAAAAGTCCGGTATAGGAGGTGGCGCCATTGCTGGAATTGTAGTCTCTGTCATAGTTGTTGGGGCAATAGTAGCATTCTTTCTGGTGAAGAGAAAATCCAAGAAGACATCTTCAGATTTAGAAAAGCTGGACAATCAATCCTTTGCTCCACTTCCCTCAAATGGAGTGCATGAAGAGAAGTCAGAGCAAACATCCTCTGTTTCAGACATGAAGACCTTTGATACTTCTGCCTCCATAAATCTTAAACCCCCACCTATTGATCGACATAAATCATTTGATGATGAAGAGTTCTCCAAGAAGCCCACAATTATGAAGAAGACTGTAACAGCTCCTGCAAATGTGAAATCATATTCTATTGCTGACCTGCAGATTGCTACTGGTAGCTTCAGTGTGGATCATCTTGTTGGCGAGGGGTCTTTTGGGCGTGTGTACCGTGCTCAATTTGATGATGGAGAGGTTCTTGCAGTGAAGAAGATAGATTCATCTGTCCTTTCCAATGATTTGTCAGATGATTTTATAGAAATAATTTCAAACATCTCCAGTTTGCATCATCCAAATGTGACAGAGCTTGTAGGTTATTGCTCAGAGTATGGACAACACCTCTTGGTCTATAAATTTCATAAAAATGGATCACTACATGACTTCCTTCATCTACCAGACGAATATAGTAAACCACTGATATGGAATTCCCGTGTCAAGATTGCTTTGGGTACTGCGCGTGCTTTAGAGTACCTACATGAAGTTAGTTCGCCATCAGTTGTTCATAAGAATATTAAATCAGCCAACATATTACTTGATGCAGAGCTTAATCCTCATCTTTCAGATAGTGGATTGGCTAGCTATATTCCAAACGCAGACCAGATATTGAGTCATAATGTTGGATCTGGATATGATGCTCCTGAAGTTGCGTTGTCTGGTCAGTATACTCTGCAAAGTGATGTCTACAGCTTTGGGGTTGTCATGTTGGAACTTCTCAGCGGACGGATGCCGTTTGATAGCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGGTAAAATGGTTGATCCTACATTGAAGGGGCTATATCCTGTTAAGTCTCTTTCTCGATTTGCTGATGTTATTGCCCTTTGCGTGCAGCCGGAGCCTGAATTCCGACCACCAATGTCAGAAGTGGTTCAAGCACTGGTGCGATTAGTGCAGCGAGCTAACATGAGCAAGCGAACATTTAGCAGTAGTGATCATGGAGGATCCCAACGAGGAAGTGATGAGGCAGCTCTACGGGAGATCTAA 2181 0.436 MVEFRRLLLLLCITSCILCWMPNGATSATDPNDATAVRLLFQNLNSPSQLGWPVNGDDPCGQPWKGISCSGNRVTEIKLSNLGLTGSLPYSLLSLCDLVNFCRDMSGNSLGGSIPYQLPPYVQRLNLAYNNITGTVPYSISNLNALTDLNLGHNQLQQGLAVNFLNLSALSTLDLSFNSLIGDLPQTMSSLSHITTLNLQNNQFTGTIDVLANLPLDNLNVENNNFTGWIPDQLKDINLQSGGNGWSSGPAPPPPPGTPPVPKRNKHHQSGGGSNTTPDVSDSSSSSVDTGKKSGIGGGAIAGIVVSVIVVGAIVAFFLVKRKSKKTSSDLEKLDNQSFAPLPSNGVHEEKSEQTSSVSDMKTFDTSASINLKPPPIDRHKSFDDEEFSKKPTIMKKTVTAPANVKSYSIADLQIATGSFSVDHLVGEGSFGRVYRAQFDDGEVLAVKKIDSSVLSNDLSDDFIEIISNISSLHHPNVTELVGYCSEYGQHLLVYKFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVSSPSVVHKNIKSANILLDAELNPHLSDSGLASYIPNADQILSHNVGSGYDAPEVALSGQYTLQSDVYSFGVVMLELLSGRMPFDSSRPRSEQSLVRWATPQLHDIDALGKMVDPTLKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFSSSDHGGSQRGSDEAALREI 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6403g00002 726 MobiDBLite consensus disorder prediction 248 262 - -
Vium6403g00002 726 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 696 IPR046959 -
Vium6403g00002 726 SUPERFAMILY Protein kinase-like (PK-like) 402 692 IPR011009 -
Vium6403g00002 726 SUPERFAMILY L domain-like 28 234 - -
Vium6403g00002 726 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 384 497 - -
Vium6403g00002 726 ProSiteProfiles Protein kinase domain profile. 420 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6403g00002 726 MobiDBLite consensus disorder prediction 268 292 - -
Vium6403g00002 726 MobiDBLite consensus disorder prediction 333 361 - -
Vium6403g00002 726 Pfam Protein tyrosine and serine/threonine kinase 423 692 IPR001245 GO:0004672|GO:0006468
Vium6403g00002 726 Gene3D Ribonuclease Inhibitor 33 185 IPR032675 -
Vium6403g00002 726 MobiDBLite consensus disorder prediction 329 361 - -
Vium6403g00002 726 MobiDBLite consensus disorder prediction 704 726 - -
Vium6403g00002 726 Gene3D Ribonuclease Inhibitor 186 246 IPR032675 -
Vium6403g00002 726 Pfam Leucine rich repeat 121 156 IPR001611 GO:0005515
Vium6403g00002 726 Gene3D Phosphorylase Kinase; domain 1 382 497 - -
Vium6403g00002 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 257 - -
Vium6403g00002 726 MobiDBLite consensus disorder prediction 240 292 - -
Vium6403g00002 726 Gene3D Transferase(Phosphotransferase) domain 1 499 714 - -
Vium6403g00002 726 ProSitePatterns Protein kinases ATP-binding region signature. 426 449 IPR017441 GO:0005524
Vium6403g00002 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 498 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6403g00002 Vium-Chr6403 1782 9317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6403g00002 13 705 Strubbelig Receptor Gene Family AT1G53730 64.429 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium6403g00002 PK_Tyr_Ser-Thr 6.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6403g00002 - - gmx:100807707 1184.47