Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6402g00001 ATGTCGACGCACACAATTGATGTGGATGAAGTGAATGAGTATAATGACAATGTTGATGACCGTAATGAAAGTTTTTTGGAAATGGACCCAACAGTGCATATGTGTTTTGAATCAATGATTGGAGCTAAAAAATTTTACACAAACTACGCCATTAGATGTGGGTTTGCCGTGCGGACTAGAACTTCTAAAAAAGATAAAGACAACAACGTCTACTACTTGAGAATAGTTTGTTCAAGGGAGGGCAAATATGTGTCTTCTGTCAAATCAGTGGTCAAAACACTTCCAAGTCAAATTAACCAATGTCCTGCTGGGATAACCATTGTAAAGAAGGACGACAAGTGGTTTATAAGAACCGTTGTTCTGGACCACAACCATGATCTTTGCCTGAATAACTCCAACCTATTTGCAGTGAATAGAAAGTTAAGCATGCAAGCAAAACACACCTTGGAGGTCAACCATGATGCTGGAGTTAGGTTAAATAAGAGTTTCCTTAGCATTGTCAATGATGTCGGCGGCTATGAAAACATGGACTTCGTCGAGCAGGACGCGAGAAACTACATTGGCCAACACAGAAGATCTTTATGTAAGGATGGTGATGGTCAGGCACTCCTACGACACTTTTCTTCAATGAAAGATAGAAATAACGAGTTCTTCTATGACATTGCACTGGATGAAGGGAATAAAATCTGTAGTGTGTTTTGGGCTGATGCAAGAAGTCGTGCTGCATGTGAAGAATTTGGTGATGTTGTTTCCTTTGACACGACTTACTTAACAAATAAGTACGACCTGCCATTTGTGCCTTTTGTTGGAGTTAACCATCAGGGACACTCCATTTTACTTGGTTGTGGATTGTTGTCTTCGGAAGACACTGTCTCATTTGTATGGTTGTTCCAATGTTGGCTAAGATGCATGCGTAATAAGAGTCCTCAAGGTATTATTACTGACCAATGCAGGGAAATGGCCAACACTATTGAACAAGTGTTTCCTAATACGAGGCACGGGTGGTTTTATGGCACATCCTGA 1023 0.4057 MSTHTIDVDEVNEYNDNVDDRNESFLEMDPTVHMCFESMIGAKKFYTNYAIRCGFAVRTRTSKKDKDNNVYYLRIVCSREGKYVSSVKSVVKTLPSQINQCPAGITIVKKDDKWFIRTVVLDHNHDLCLNNSNLFAVNRKLSMQAKHTLEVNHDAGVRLNKSFLSIVNDVGGYENMDFVEQDARNYIGQHRRSLCKDGDGQALLRHFSSMKDRNNEFFYDIALDEGNKICSVFWADARSRAACEEFGDVVSFDTTYLTNKYDLPFVPFVGVNHQGHSILLGCGLLSSEDTVSFVWLFQCWLRCMRNKSPQGIITDQCREMANTIEQVFPNTRHGWFYGTS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6402g00001 340 PANTHER OS01G0519700 PROTEIN 23 333 - -
Vium6402g00001 340 Pfam MULE transposase domain 249 335 IPR018289 -
Vium6402g00001 340 Pfam FAR1 DNA-binding domain 44 127 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6402g00001 Vium-Chr6402 6072 7094 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium6402g00001 MULE 1.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6402g00001 - - var:108341492 533.102