Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6398g00001 ATGCAACGCATTTTCTGTTTGGTGTTTCTGGTTTCTCTGTTTTCCCTCTTTTTGTCCCGACCCAATGCAGAACCCACAGAAGACAAGCAAGCACTGCTTCATTTAGTTGAAAAGTTGGCTCCTTCACGACCCCTCAATTGGAACCCAACCTCTTCTCCTTGTATATCTTGGACCGGTGTAACCTGCAACTCTGACCACTCACGAGTTATAGCCATTCACTTGCCAGGCTTTGGCTTTCATGGAACCATTCCTTCCAATACGCTAAGCCGTGTTACGTGCTTGCAGACACTCAGTCTCAGATCTAACTCCATAACCGGTCCTCTCCCTTCTGATCTCTCCAACCTTTCAGACCTTTCCTTTCTCTACCTTCAGTTCAACAATTTCTCTGGTCCCTTACCTGACTTTTCTGCCTGGAGTAACCTCTCTGTTGTGGACCTCTCCAATAACTGTTTCACCGGCACCATTCCTCTCTCCCTCTCCAATTTGACTCATCTAACTGCTGTCAACCTCGCCAACAACTCACTTTCTGGCCAAATCCCTCTTTCTCTCCACAGGTTTCCTGACTCGGCTTTCGTGGGAAACAATGTCTCTCTCCAGACAGTTTCACATTCCAAATCTGCGAAACACGGTGAAACGGCGCTGTTTTGGGTTGTTGTTGCTGCTGCTTCTGTTGCTTTTGCAGCTTTCTTTGTTTTTATCTTTTTGTGCTGGTCCCGAAAGAAGAAAGGGGATTCCTTTACTCGGAAGATGCTGAAGGGAGATATGTCTCCGGAAAAGGTAGTTTCCAGGGACCTTGATGCGAACAATAAGATCTTTTTCTTTGAGGGGTGTAGCTATGCGTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTACTGGGGAAGGGGACGTTTGGTGCTGCATATAAGGCTGCTTTGGAGGATGCTACCACTGTTGTTGTGAAGAGGTTGAAGGAAGTGGCTGTTGGAAAGAAGGACTTTGAGCAGCACATGGAGGTTGTGGGGAATCTCAAACATGAGAATGTGGTTCAGCTAAAGGGGTATTACTATTCCAAAGATGAGAAACTCATGGTCTATGATTACTACTCTCAAGGGAGTCTCTCTACTTTGTTGCACGGTAAAAGAGGAGAGGATAGGGTGCCTTTAGACTGGGAGACTAGAATGAAAATTGCTTTGGGTGCTGCACGAGGCCTTACTCGAATCCATTGCGAGAATGGGGGGAAGCTTGTGCATGGCAACATCAGATCCTCAAATATCTTTGTGAATACTACACAATATGGTTGCATATCTGATCTTGGCCTGGCAACCATCATGAGTTCCGTTGCCATACCCATCTCACGAGCCGCTGGTTACAGAGCACCAGAAGTCACAGACACTAGAAAAGCAACGCAACCTGCTGATGTTTACAGTTTTGGTGTGGTGTTGCTGGAGATTCTCACTGGGAAATCCCCTGTGTACACCACTGGTGGCGACGAAATTGTGCACTTGGTGAGATGGGTTCATTCGGTTGTCAGAGAGGAGTGGACAGCAGAAGTGTTTGACTTGGAGCTGATCAGATATCCCAACATAGAGGAAGAGATGGTTGAAATGTTACAGATAGCCATGTCTTGCGTGATGAGGGTTCCTTATCAGAGGCCTAAGATGTCGGAAATTGTAAAAATGATAGAAAATGTGAGGCAGATTGATATAGCCATCATGACTCAGCAACCATCATCTGAGAACTAA 1728 0.463 MQRIFCLVFLVSLFSLFLSRPNAEPTEDKQALLHLVEKLAPSRPLNWNPTSSPCISWTGVTCNSDHSRVIAIHLPGFGFHGTIPSNTLSRVTCLQTLSLRSNSITGPLPSDLSNLSDLSFLYLQFNNFSGPLPDFSAWSNLSVVDLSNNCFTGTIPLSLSNLTHLTAVNLANNSLSGQIPLSLHRFPDSAFVGNNVSLQTVSHSKSAKHGETALFWVVVAAASVAFAAFFVFIFLCWSRKKKGDSFTRKMLKGDMSPEKVVSRDLDANNKIFFFEGCSYAFDLEDLLRASAEVLGKGTFGAAYKAALEDATTVVVKRLKEVAVGKKDFEQHMEVVGNLKHENVVQLKGYYYSKDEKLMVYDYYSQGSLSTLLHGKRGEDRVPLDWETRMKIALGAARGLTRIHCENGGKLVHGNIRSSNIFVNTTQYGCISDLGLATIMSSVAIPISRAAGYRAPEVTDTRKATQPADVYSFGVVLLEILTGKSPVYTTGGDEIVHLVRWVHSVVREEWTAEVFDLELIRYPNIEEEMVEMLQIAMSCVMRVPYQRPKMSEIVKMIENVRQIDIAIMTQQPSSEN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6398g00001 575 PANTHER OS05G0588300 PROTEIN 4 571 - -
Vium6398g00001 575 FunFam Probable inactive receptor kinase RLK902 25 184 - -
Vium6398g00001 575 FunFam pollen receptor-like kinase 1 257 362 - -
Vium6398g00001 575 Pfam Protein tyrosine and serine/threonine kinase 292 555 IPR001245 GO:0004672|GO:0006468
Vium6398g00001 575 ProSitePatterns Protein kinases ATP-binding region signature. 294 325 IPR017441 GO:0005524
Vium6398g00001 575 Gene3D Ribonuclease Inhibitor 25 207 IPR032675 -
Vium6398g00001 575 SUPERFAMILY Protein kinase-like (PK-like) 292 556 IPR011009 -
Vium6398g00001 575 SUPERFAMILY L domain-like 40 189 - -
Vium6398g00001 575 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vium6398g00001 575 Gene3D Transferase(Phosphotransferase) domain 1 363 572 - -
Vium6398g00001 575 ProSiteProfiles Protein kinase domain profile. 288 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6398g00001 575 Gene3D Phosphorylase Kinase; domain 1 257 362 - -
Vium6398g00001 575 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 363 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6398g00001 Vium-Chr6398 936 4120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6398g00001 22 575 Receptor kinase-like Gene Family AT4G23740 59.669 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium6398g00001 PK_Tyr_Ser-Thr 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6398g00001 - - vun:114171626 1025.77