Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6391g00001 ATGGAAGCAGAAATCCCAGCTGCAGCTGTGAAAGAATCTGAGCAACAGAAGTTTGCTCTACCCGTGGATTCTGAAAACAAGGCCACCGAGTTCAGATTGTTTTCCGTAGCTAAACCCCACATGAGATCTTTTCACCTATCATGGATCTCTTTTTTCTCATGCTTTGTGTCTAGCTTTGCTGCTCCACCCCTCCTTCCCATAATCCGGGACAACCTGAACCTCACAGCCACTGACATTGGAAATGCTGGTGTTGCATCGGTTTCCGGTGCAGTATTAGCAAGAATTGCAATGGGAACAGCTTGTGACTTAGTTGGACCGCGCCTGGCCTCTGCATCACTCATCCTCCTCACAGCACCATTTGTGTACTTCACTTCCATCATCAACTCACCCACCTCGTACCTCCTTGTCCGTTTCTTCACCGGCTTCTCCCTGGCCACCTTTGTCTCCACACAGTTCTGGATGAGCTCTATGTTCTCTGCTCCGGTGGTCGGTTCGGCAAACGGATTTTCCGGCGGATGGGGCAACCTCGGAGGAGGAGCCACCCAACTAATCATGCCCCTTGTATTCTCCCTCATCCGTGACATTGGCGCTACCAAATTCACAGCATGGAGGATTGCATTCTTTGTCCCTGCCATGTTCCAGATGCTCACGGCATTTTCAATCCTGATATTTGGGCAGGACATGCCCAATGGAAACTTCCAGCGGTTGAAGAAGTCAGGGGAGAAAGCAAAAGACGAATTCTCAAGAGTGGTGTATCATGGGATCAGTAACTACAGAGGGTGGATTCTGGCGTTGACTTACGGCTACTGCTTTGGGGTGGAGTTGACCATAGACAACATCATAGCTGAATACTTCTATGACAGGTTTAATCTGAAACTCCCCACTGCAGGAATCATTGCTGCAAGCTTTGGGTTGGCTAACTTGTTTTCTAGACCTGGTGGGGGTTATATATCAGATGTAATGGGAAAGAGGTTTGGCATGAGAGGGAGGTTGTGGGCTTTATGGCTGTGCCAAACCTTGGCCGGTGTCTTCTGCATCATCCTTGGCCTTGTCGGATCTTTAAGTGTATCCGTCCTTATTATGATCATATTCTCTATCTTTGTCCAAGCCGCATGTGGAATGACCTTTGGGATTGTTCCCTTTGTCTCAAGAAGGTCATTGGGGGTGATATCTGGAATGACAGGAGGAGGAGGCAATGTGGGTGCAGTTGTGACCCAGCTAATTTTCTTCAAAGGATCCAAGTTTTCAAAAGAAAGAGGAATAACTCTAATGGGAGTGATGATCATAATATGCACTCTGCCAATATGTTTAATCTATTTTCCACAATGGGGTGGAATGTTTTGTGGTCCCTCGTCTAAGAAGATCACGGAAGAAGATTACTACTTAGCTGAGTGGAACTCAAAGGAGAAGGAGAAAGGGTCCCATCATGCAAGCTTGAAATTTGCCAATAACAGCAAAAGTGAAAGAGGCAAAAAACTGAATGCATCAACAGAGCCTTCCGAGGAGATCTAA 1512 0.4702 MEAEIPAAAVKESEQQKFALPVDSENKATEFRLFSVAKPHMRSFHLSWISFFSCFVSSFAAPPLLPIIRDNLNLTATDIGNAGVASVSGAVLARIAMGTACDLVGPRLASASLILLTAPFVYFTSIINSPTSYLLVRFFTGFSLATFVSTQFWMSSMFSAPVVGSANGFSGGWGNLGGGATQLIMPLVFSLIRDIGATKFTAWRIAFFVPAMFQMLTAFSILIFGQDMPNGNFQRLKKSGEKAKDEFSRVVYHGISNYRGWILALTYGYCFGVELTIDNIIAEYFYDRFNLKLPTAGIIAASFGLANLFSRPGGGYISDVMGKRFGMRGRLWALWLCQTLAGVFCIILGLVGSLSVSVLIMIIFSIFVQAACGMTFGIVPFVSRRSLGVISGMTGGGGNVGAVVTQLIFFKGSKFSKERGITLMGVMIIICTLPICLIYFPQWGGMFCGPSSKKITEEDYYLAEWNSKEKEKGSHHASLKFANNSKSERGKKLNASTEPSEEI 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6391g00001 503 CDD MFS_NRT2_like 44 437 IPR044772 GO:0015112
Vium6391g00001 503 Gene3D MFS general substrate transporter like domains 36 234 IPR036259 -
Vium6391g00001 503 MobiDBLite consensus disorder prediction 485 503 - -
Vium6391g00001 503 Pfam Major Facilitator Superfamily 48 404 IPR011701 GO:0022857|GO:0055085
Vium6391g00001 503 SUPERFAMILY MFS general substrate transporter 35 439 IPR036259 -
Vium6391g00001 503 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 11 492 IPR044772 GO:0015112
Vium6391g00001 503 Gene3D MFS general substrate transporter like domains 243 444 IPR036259 -
Vium6391g00001 503 MobiDBLite consensus disorder prediction 468 503 - -
Vium6391g00001 503 FunFam Nitrate transporter 2.1 244 445 - -
Vium6391g00001 503 FunFam High affinity nitrate transporter 2.5 36 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6391g00001 Vium-Chr6391 46244 49590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6391g00001 16 500 Inorganic Solute Cotransporters AT1G12940 74.433 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6391g00001 K02575 - gmx:100787888 882.863