Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium638g00005 ATGGCAGCGGCTATAGGTATGTACAACAACAGCAACATCGTACCGGAATTCCTAGATCCGTACAGTGAGGAGCTGATGAAAGCACTTGAGCCTTTTGTTAAAAGTGATTATTTCTCTGTCTCTTCTGATTCCGCTTCTTCCTATCGTCGATCACACGCTCCTTCTTCTTCCTCTTCTTCTTCTTTTTCTTCTCCATCTTCTTCTTATTCTCTCATTTCATCTACTTCGTATCCCTCCCCCAACCAAATCAAGCTCAACAAACTCACCCCAGACCAAATCCTCCAGATTCAGGCGCAGGTTGGGCTTCAGCAGCACATGGTTTATTCGACTCAACGTGAAAACCAAAACCAGCTGGGCCCAAAACGTGTTCCCATGAAGCACGGTGGCGCGGCGGCGAAAGCCACGAAGCTGTACCGCGGGGTGAGGCAACGGCATTGGGGGAAGTGGGTCGCCGAGATCAGACTCCCGAAGAACCGGACGCGCCTATGGCTGGGAACATTCGACACCGGAGAAGAAGCGGCGTTGGCGTACGACAACGCAGCGTTTAAGCTCAGAGGCGAGTTCGCGCGCCTCAACTTCCCTCATCTGCGACACCAGGGAGCGTTCGTATTCGGCGAATTCGGAGATTACAAGCCTCTACCTTCTTCCGTCGACTCCAAGCTCCAAGCTATTTGCGAAAGCTTGGCGAAACAAGAACAACAAAAAACGTGTTGCTCTGTCGAAGACGTGAAGCCCGAGGTACACACTGCTGCTGAGCTGGCACGGGTGGAGTCTGACGTGGTGCAATCCAACGTTTGTCCCGAGTTCGAAAATTTTAAGGTAGAAAACGGGAACGACAACCCAATGTTATCATCGCCGGTGTCTGGCGAGTCGTCTTCGCCTGAATCGGGTGTGACTTTCTTGGATTTCTCGGACTTCGCACATTCTAATTATGAGTGGGATGAAATGGAGAGCTTTGGGTTGGAGAAGTACCCTTCGGTGGAGATTGATTGGGCATCTATATGA 1005 0.5095 MAAAIGMYNNSNIVPEFLDPYSEELMKALEPFVKSDYFSVSSDSASSYRRSHAPSSSSSSSFSSPSSSYSLISSTSYPSPNQIKLNKLTPDQILQIQAQVGLQQHMVYSTQRENQNQLGPKRVPMKHGGAAAKATKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGEEAALAYDNAAFKLRGEFARLNFPHLRHQGAFVFGEFGDYKPLPSSVDSKLQAICESLAKQEQQKTCCSVEDVKPEVHTAAELARVESDVVQSNVCPEFENFKVENGNDNPMLSSPVSGESSSPESGVTFLDFSDFAHSNYEWDEMESFGLEKYPSVEIDWASI 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium638g00005 334 Pfam AP2 domain 138 187 IPR001471 GO:0003700|GO:0006355
Vium638g00005 334 FunFam Ethylene-responsive transcription factor 2 136 195 - -
Vium638g00005 334 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Vium638g00005 334 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Vium638g00005 334 Gene3D AP2/ERF domain 137 195 IPR036955 GO:0003700|GO:0006355
Vium638g00005 334 ProSiteProfiles AP2/ERF domain profile. 137 194 IPR001471 GO:0003700|GO:0006355
Vium638g00005 334 SUPERFAMILY DNA-binding domain 137 195 IPR016177 GO:0003677
Vium638g00005 334 CDD AP2 136 196 IPR001471 GO:0003700|GO:0006355
Vium638g00005 334 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 334 - -
Vium638g00005 334 SMART rav1_2 137 200 IPR001471 GO:0003700|GO:0006355
Vium638g00005 334 MobiDBLite consensus disorder prediction 277 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium638g00005 Vium-Chr638 41516 43088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium638g00005 3 334 AP2-EREBP Transcription Factor Family AT4G39780 45.345 1.14e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium638g00005 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium638g00005 K09286 - gmx:100797648 443.351