Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6389g00007 ATGTCTGCTGCTATCTTTGCGAAGGAAAACATACTAAGTAATGTTTTGACTGCAATACAGCAAGATATCAGTAGGGATGAGTGGCTTCAAGCTCTGCCTCGTGCTCTAGTTGTTGCTTTTGTGAAAACTGACATAGAGTTTCAGAAGAAAGGGGAAACATCTGGAACAACAGCTACATTTGTTCTGATTGATGGATGGACTGTTACTGTTGCATCTGTCGGGGATTCCCGTTGCATATTAGATACACAGGGAGGTGTCGTCTCTCTCTTGACAGTTGATCACAGATTGGAAGAAAATGTAGAAGAGAGGGAACGCATTACTGCCAGTGGTGGTGAAGTAGGAAGACTGAACGTTTTTGGAGGCAATGAGGTAGGACCTCTTCGTTGCTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACACAGATGTCGGAGAATTTATTGTGCCAATACCACACGTTAAGCAAGTGAAGCTTTCAAAAGCTGGTGGAAGACTTATTATAGCTTCTGATGGCATTTGGGATGCTTTATCTTCTGAAATGGCTGCCAAGTCATGCCGGGGTCTACCTGCTGAGCTGGCTGCAAAGATGGTGGTCAAGGAAGCTCTAAGGACAAGGGGACTGAAGGATGATACAACTTGCCTTGTTGTAGATATTATTCCGTCAGATCATCCTGTATTACCAACAATTCCTACAAAGAAACACAATATGCTAACTTCCCTTTTATTTGGAAAGAAATCTCAAAACTCTACAAACAAAAGTACCAATAAGCTTTCAGCTGTAGGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCTATGCTTACAGAAAGATTGGGTAAGGATTTTCCATCTAGTACGAATTCTGGAATGTTCCGCTGTGCGGTTTGCCAAGCTGATCAACCCTCTGGAGATGGTTTATCAATGAACACTGGGTCCTTTTTTTCTCCAGTATCTAAGCCATGGGAAGGTCCGTTCCTCTGCACAAACTGTCAGAAGAAGAAAGATGCCATGGAAGGAAAAAGGTCTAGCAGGCCCTCAGAAACAGCATAG 1056 0.4337 MSAAIFAKENILSNVLTAIQQDISRDEWLQALPRALVVAFVKTDIEFQKKGETSGTTATFVLIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERITASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSKAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAAKMVVKEALRTRGLKDDTTCLVVDIIPSDHPVLPTIPTKKHNMLTSLLFGKKSQNSTNKSTNKLSAVGVVEELFEEGSAMLTERLGKDFPSSTNSGMFRCAVCQADQPSGDGLSMNTGSFFSPVSKPWEGPFLCTNCQKKKDAMEGKRSSRPSETA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6389g00007 351 SUPERFAMILY PP2C-like 3 220 IPR036457 -
Vium6389g00007 351 CDD PP2Cc 3 220 IPR001932 -
Vium6389g00007 351 FunFam probable protein phosphatase 2C 5 1 225 - -
Vium6389g00007 351 Gene3D - 1 224 IPR036457 -
Vium6389g00007 351 SMART PP2C_4 1 218 IPR001932 -
Vium6389g00007 351 ProSiteProfiles PPM-type phosphatase domain profile. 1 220 IPR001932 -
Vium6389g00007 351 Pfam Protein phosphatase 2C 14 208 IPR001932 -
Vium6389g00007 351 PANTHER PROTEIN PHOSPHATASE 3 219 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6389g00007 Vium-Chr6389 48099 51300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6389g00007 2 350 PP2C-type Phosphatase Gene Family AT1G09160 77.077 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6389g00007 - - gmx:100794630 649.432