Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6389g00005 ATGGCGCCAGAGCTAGCCTTGTCATTCTCTGTTGTATCTGTGGTCGAAGATGTTCTTCAGACGCACGGAAGCTGTTTAAGCGACATTCACTTGGCATCAAGGATGGCAGAAGAAGCTTCCTCAAGAAGGAATGAAGCAGCTGGGTGGCTAAGAAAGACAGTTGGAGTTGTTGGAGGGAAAGACATTCCAGATGAGCCTACTGAAGAAGATTTCAGGATTGCATTACGAAGTGGCATTGTCCTTTGCAATGCTCTTAACAAAATTCAACCCGGAGCAGTGCCCAAGGTAGTTGAAGTCCCCTGCGATAGTGTTATCATTCCTGATGGGGCACCTCTGTCTACTTACCAATACTTTGAAAATGTAAGGAATTTTCTGGTAACTATGGAAGAAATGGGGCTTCCCACCTTTGAAGTGTCTGATATAGAACAGGGAGGAAAATCTTCGAGGATAGTGAATTGTGTTTTAGCACTTAAGTCTTACAGTGAATGGAAACAGGGAGGAAAAAATGGGTCATGGAAATATGGTGGGAATCCAAAGCCACCTACCAATGATAAACCAGCTATTATGATGAAAGTCTCAGAACCATTCATGAGGTCTTTGTCAAAGGGTAGTAGGTTAGGCGATAAAGATGGGTTACTGAATGATATATCTACAAACAGTGAAGGGGGTTCTATACCCTCCCTGAATTTACTAATTCGTGAAATTTTATCTGATAAGAAGCTAGAAGAAATTCCCACTGTGGTGGAGTCTCTGCTTAGCAGAGTCATGGAGGAGTTTGAAAAGCGCTTGCTAATCCAACAAGAAATGTTCAAAACAACTCAAAACTATAAGGCACTGCCTGAAGCAGAGGATTCCAATGTGAAATCTGCCTGTAATGGTGAAGAGATGGAAGAAGATGGAGATGTGGTGGTTAAACACAAGGAATTTGTTGATGTGAAGGACAATGTCGACGAAGAACCAAACAGCCAGTATTTTAAGCAGCAAGAGTTAATTCAGCAGCAAAACGAGAACGTCCAGGAATTGAAAATGATGGTTCATCAAACAAAAACAGGAATACAGGTTCTGCAAAATAAATACCAGGAGGATATGATCTATCTAAGTAAACACCTGCATGGCCTAGCTTCTGCTGCTTCAGGATATCAGAAAATTCTTGAAGAAAACCGCAAGCTATATAATCAATTGCAAGACCTGAAAGGAAATATTAGGGTGTACTGTAGAGTTCGTCCCTCAAAAGGTGCCCAACCAAATCATTGCTCTGTCAGTAACATAGATGAAGGAAGTATATCACTCATAGTGCCATCCAAAAACGGGAAAGATGGGAAGAAGACATTTAATTTCAACAGAGTCTTTGGTCCTTCTTCAACCCAAGCGGAGGTTTTCTCAGATACAAAACCACTGATTCGTTCGGTTCTTGATGGCTACAACGTGTGTATATTTGCTTATGGTCAGACAGGATCAGGAAAAACACACACTATGTCTGGACCAGACAATTATACTGAGGAAACAGTGGGTGTCAACTACCGCGCTCTGAAAGATCTTTTCCAAATCTCAGAGCAGAGAAAAGACACCATTCATTATGATATATCTGTTCAAATGCTTGAGATTTACAATGAACAAGTCAGAGATCTATTATCGACAGACAGTACTCACAAAAGATTAGAAATCCGCAACAGTTCTCATAATGGCATTAACGTGCCAGATGCAAACCTTGTTCCTGTTTCATCCACTTCCGATGTCTTAAAGTTAATGAACTTGGGACAAAATAACCGGGCAGTTAGTTCTACTGCCATGAATGATCGGAGTAGTCGTTCTCATAGCTGCTTGACAGTTCATGTTCACGGAAGAGAGCTAGCGTCAGGGAATAGTCTTCGTGGTTGTATCCACTTAGTTGACTTGGCAGGAAGTGAGAGGGTTGATAAATCTGAGGTCACAGGAGATAGGCTGAAGGAAGCTCAACATATTAACAAGTCGCTTTCTGCATTAGGAGATGTAATTGCTTCACTTGCCCAAAAGCAATCACACGTTCCTTATAGGAACAGCAAACTTACTCAGCTACTTCAAGATTCTCTCGGAGGCCAAGCAAAGACACTTATGTTTGTTCATGTTAGTCCCGAGCCAGATGCCATTGGAGAAACAATCAGTACATTGAAGTTCGCAGAAAGGGTATCCACCGTTGAACTTGGTGCTGCTCGAGTTAACAAAGATAGTTCAGAGGTCAAAGAGCTTAAAGAACAGATTGCGATTCTGAAGGCAACCTCCGCCAGGAAGGATGGAGAATCGGAACAATTTCATCAGTCTGCAAATAGCATTTCTGAAACTCCAAAGTCCAAATCTCTATTGTCTTCCACTGCACGGTCACCTACTTCGTCTCATGGAAATCGTAAGCCACCAAGGGAAGATTCCAGTAGCACGGTGGAGGACAAGAAAAAGGGTAGCCCGAAGCTCGCGAAAAGAGGAAGCCTTGACCCCTTGGACGTTCATAGGAACTCACCACCTTGGCCACATCATGCAGAGGAAAATGGAAAAGAGGATGATAAGGAATTGGTTTCTGGGGATTGTCTTGGTAAGCGTACAAAAAGGAATGGCCGCTTAAGTACTGAAAACAACATCGTGGGAGACTGTGATACAGAAAGCAAGCAGTCATCTTCTCCAAAGCTAAGTCCCTTGGATATTTTTGACCCTTCCAAAATATGCACGGAGGAGACCACCATAAATGACTGTGATGAATTTGAGTTAGCAACCAGTGAAAGTTCAGAATCAGACAAGAGTTGGGAATCACATGTACACGTACCAAAAGCAACCACTCATTCCAACGGAGTAGCAGCTAAAACAAAAAAATCACCAAATCCAAGACAAGCCAAGAATCAAGAAAACAGGAGTAAGATCCCGTCATTGTCTCCTTCGTCATCAAGGAGACAACCTACGGTAGTTAGTCAACAGAGAAAGCATCTAGATGCAAAAAGAAGAACTGGAAATGCCAAATGA 2985 0.4235 MAPELALSFSVVSVVEDVLQTHGSCLSDIHLASRMAEEASSRRNEAAGWLRKTVGVVGGKDIPDEPTEEDFRIALRSGIVLCNALNKIQPGAVPKVVEVPCDSVIIPDGAPLSTYQYFENVRNFLVTMEEMGLPTFEVSDIEQGGKSSRIVNCVLALKSYSEWKQGGKNGSWKYGGNPKPPTNDKPAIMMKVSEPFMRSLSKGSRLGDKDGLLNDISTNSEGGSIPSLNLLIREILSDKKLEEIPTVVESLLSRVMEEFEKRLLIQQEMFKTTQNYKALPEAEDSNVKSACNGEEMEEDGDVVVKHKEFVDVKDNVDEEPNSQYFKQQELIQQQNENVQELKMMVHQTKTGIQVLQNKYQEDMIYLSKHLHGLASAASGYQKILEENRKLYNQLQDLKGNIRVYCRVRPSKGAQPNHCSVSNIDEGSISLIVPSKNGKDGKKTFNFNRVFGPSSTQAEVFSDTKPLIRSVLDGYNVCIFAYGQTGSGKTHTMSGPDNYTEETVGVNYRALKDLFQISEQRKDTIHYDISVQMLEIYNEQVRDLLSTDSTHKRLEIRNSSHNGINVPDANLVPVSSTSDVLKLMNLGQNNRAVSSTAMNDRSSRSHSCLTVHVHGRELASGNSLRGCIHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAQKQSHVPYRNSKLTQLLQDSLGGQAKTLMFVHVSPEPDAIGETISTLKFAERVSTVELGAARVNKDSSEVKELKEQIAILKATSARKDGESEQFHQSANSISETPKSKSLLSSTARSPTSSHGNRKPPREDSSSTVEDKKKGSPKLAKRGSLDPLDVHRNSPPWPHHAEENGKEDDKELVSGDCLGKRTKRNGRLSTENNIVGDCDTESKQSSSPKLSPLDIFDPSKICTEETTINDCDEFELATSESSESDKSWESHVHVPKATTHSNGVAAKTKKSPNPRQAKNQENRSKIPSLSPSSSRRQPTVVSQQRKHLDAKRRTGNAK 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6389g00005 994 Pfam Kinesin motor domain 406 724 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6389g00005 994 PANTHER KINESIN-LIKE PROTEIN KLP-3 47 950 IPR027640 GO:0003777|GO:0007018
Vium6389g00005 994 Gene3D Kinesin motor domain 341 727 IPR036961 -
Vium6389g00005 994 Pfam Calponin homology (CH) domain 41 162 IPR001715 GO:0005515
Vium6389g00005 994 ProSiteProfiles Kinesin motor domain profile. 400 725 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6389g00005 994 SMART kinesin_4 398 733 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6389g00005 994 Coils Coil 732 752 - -
Vium6389g00005 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 758 IPR027417 -
Vium6389g00005 994 MobiDBLite consensus disorder prediction 792 863 - -
Vium6389g00005 994 FunFam Kinesin-like protein KIN-14I isoform A 395 767 - -
Vium6389g00005 994 SMART ch_5 42 160 IPR001715 GO:0005515
Vium6389g00005 994 CDD KISc_C_terminal 398 727 - -
Vium6389g00005 994 Gene3D - 35 175 IPR036872 -
Vium6389g00005 994 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Vium6389g00005 994 PRINTS Kinesin heavy chain signature 595 612 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6389g00005 994 PRINTS Kinesin heavy chain signature 626 644 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6389g00005 994 PRINTS Kinesin heavy chain signature 675 696 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6389g00005 994 PRINTS Kinesin heavy chain signature 473 494 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6389g00005 994 MobiDBLite consensus disorder prediction 754 894 - -
Vium6389g00005 994 FunFam Kinesin-like protein KIN-14I isoform A 27 179 - -
Vium6389g00005 994 MobiDBLite consensus disorder prediction 909 994 - -
Vium6389g00005 994 SUPERFAMILY Calponin-homology domain, CH-domain 45 175 IPR036872 -
Vium6389g00005 994 CDD CH_AtKIN14-like 42 159 - -
Vium6389g00005 994 MobiDBLite consensus disorder prediction 915 929 - -
Vium6389g00005 994 Coils Coil 380 400 - -
Vium6389g00005 994 MobiDBLite consensus disorder prediction 930 980 - -
Vium6389g00005 994 MobiDBLite consensus disorder prediction 864 888 - -
Vium6389g00005 994 MobiDBLite consensus disorder prediction 763 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6389g00005 Vium-Chr6389 27929 39429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6389g00005 388 761 Calmodulin-binding Proteins AT5G65930 42.063 2.08e-79 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6389g00005 K10406 - gmx:100808197 1440.25