Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6389g00003 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAGGGAGGTTCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGATGGCAGAGAGGTATCTGACTATTATTGCTCTTCCTTTGATGGATGTGCATCAGAGGAAAGTTTTGGGAGTTTTTTGTCAGAGGAGGATGAGGAATTTCAAACAGTGAGGAATTTCAATAGATCCAAGGCAAAAAGGGGCACTGCTAGGAGGCCGAAAAATGCCAGTAAAAACTCGCACAAGAGGGAAAGGATTAAATATGCAGAAGAGGAGGTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAAGAATACAAAGTGGAGGAAGAGGAGGAGGAGGAGGAGGAAATTCAAGAAGCAAGGAATTTCAGTAGACCAAAGGCAAAAAGTGGTGTATGCAGTAAGAAAAGAAGTGCAGGAAAAATCTCCTCAAAGAGGGGAAGGAAATTGCACACAGAAGAACTGGAAGAGGAGGAGGAAGAGGTCAAACTAGAGGAGGAGGAGGAAGAGAAGGAGAAGGTGGACAGAGGTGGAGATGACAAAGAAGAGGAAGGAGATAGAGAGGGAGAGGATGAAGATTTTGACTATGAGGATGAGGATGATGAGTTTTTTCCTGAGGAAGATGATTATTCAGATGAGGAAGAAGAAATGAGAGGGAAAAAGAAGAACAATGATGGCATGACAATGGTCAAGAAGGTTTTTCGGAAGAAAAGGTCCTCTGTAGTTTCGACTAGAGGTAGGAAAAGGCAGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAAGAAAAGAAAGAATGGGAGGTTAAGGAAGAAAGTAAGATGTGAAGATGAAGATGAAGATGATTTTATAGATAATAGCCCAACCATGAGAACAAGTAGGAAAAAACGGGGCCAGAAGAGAAAAAGGGTACTTCTTTCAGATTCAGAATATCCATCTTCTGGTTCGTCTGATTTTGAGTTTACTATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAAAGATTATGCGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCAACTAATAAACAATGAAGAGGTTGGTGTCCATGAGGAACAAATTCAGTTGCGGAAACCACCAGCTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGTAAAAAGTGAGATGGGTAAGCAAGTTTGTGGGATTTGTCTGTCTGAAGAAGATAAAAGAAGAGTTAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGTTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCAACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCCGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTCGCTCTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGTTGACAATCCAGAACCTTCCTGTTAGAGCACCTCCTACTCTACATGTACGAGAAAGTATAGACCTCAACTTGATTTCCTCACCCCGTGCAGCTTTTAATCAAGGTTTTGGGCATCTTCCATCTTCTAGATTTAGTGGCAGAAGTGTTGAAGGATCTTCTCCAGTATCCGGAGGGGCACCAACGTTATCAGAGAGACGCTGGATACACCGTCAAATTCAGCAATTACTTTCAATAGATAGGATGACTGCTACACCTGGCAGAACCACCAATGGTATTTCCGCTACCAGTTCAACTAGTAACTTGTATAGCTCTCAAATTGATCAAAGTAGGGGAACCGCCACTCTTCATGTTAGGACGCAGGATGTGGGAACATCATACCACACATTTTTGGATGACAGATTATGCAACAATACCTCCCCGCTAATGCAGAATGGGCCATTATGGCCTGGACTTATGGCGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGCAGATCAAATAATGTCCCTGATGATGGCTTATCCACTGCTGTCAGAGAAGAGACGAACTTTCACACTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGTCACCTGAAGAGCTTGTCTCAAAATATTGATTTAGGCCACAGTACTTTCAAGGATATTGCAAGGAGTTCTATGCACACCATACTAGCAGCCTGTGATCTTGAGCACAAGAACAGTGAGGTTTGCAATGTGCCTCCTCCGTCTGCCTGTCCGCACATGGAACTAATGGCTGGCGGGCCAACTAGTCTGATTAAAGGTTGCTGCTCGTCGTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGATTTTGGACGCAAGAGTTTCATCCCAGTGGTTACGATTAGGTTTATAG 2655 0.4388 MVRGGRFSGKRNFRKRVRSKEGGSDDSDEDYVVSDDGREVSDYYCSSFDGCASEESFGSFLSEEDEEFQTVRNFNRSKAKRGTARRPKNASKNSHKRERIKYAEEEVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEYKVEEEEEEEEEIQEARNFSRPKAKSGVCSKKRSAGKISSKRGRKLHTEELEEEEEEVKLEEEEEEKEKVDRGGDDKEEEGDREGEDEDFDYEDEDDEFFPEEDDYSDEEEEMRGKKKNNDGMTMVKKVFRKKRSSVVSTRGRKRQSSRASKKPLRKKRKNGRLRKKVRCEDEDEDDFIDNSPTMRTSRKKRGQKRKRVLLSDSEYPSSGSSDFEFTISEEEREQVREAKRLCGNLRNNLRSSSQLINNEEVGVHEEQIQLRKPPARKGKEKIEEPQGRKGKEKVEVKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRLTIQNLPVRAPPTLHVRESIDLNLISSPRAAFNQGFGHLPSSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMTATPGRTTNGISATSSTSNLYSSQIDQSRGTATLHVRTQDVGTSYHTFLDDRLCNNTSPLMQNGPLWPGLMATPPVPDCEQVHQFSRSNNVPDDGLSTAVREETNFHTAKEQLQSMVKSHLKSLSQNIDLGHSTFKDIARSSMHTILAACDLEHKNSEVCNVPPPSACPHMELMAGGPTSLIKGCCSSCFDSFVGDVVKRILDARVSSQWLRLGL 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6389g00003 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 572 IPR013083 -
Vium6389g00003 884 Coils Coil 180 216 - -
Vium6389g00003 884 ProSiteProfiles Zinc finger PHD-type profile. 522 571 IPR019787 -
Vium6389g00003 884 MobiDBLite consensus disorder prediction 201 215 - -
Vium6389g00003 884 Pfam PHD-finger 524 570 IPR019787 -
Vium6389g00003 884 CDD RING-HC_Topors 430 477 - -
Vium6389g00003 884 MobiDBLite consensus disorder prediction 162 177 - -
Vium6389g00003 884 MobiDBLite consensus disorder prediction 246 264 - -
Vium6389g00003 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 495 IPR013083 -
Vium6389g00003 884 MobiDBLite consensus disorder prediction 216 245 - -
Vium6389g00003 884 Coils Coil 93 152 - -
Vium6389g00003 884 MobiDBLite consensus disorder prediction 392 422 - -
Vium6389g00003 884 MobiDBLite consensus disorder prediction 1 37 - -
Vium6389g00003 884 PANTHER F18C1.6 PROTEIN 130 874 - -
Vium6389g00003 884 MobiDBLite consensus disorder prediction 71 342 - -
Vium6389g00003 884 ProSitePatterns Zinc finger RING-type signature. 451 460 IPR017907 -
Vium6389g00003 884 Coils Coil 355 375 - -
Vium6389g00003 884 MobiDBLite consensus disorder prediction 78 95 - -
Vium6389g00003 884 SMART PHD_3 524 569 IPR001965 -
Vium6389g00003 884 ProSiteProfiles Zinc finger RING-type profile. 432 474 IPR001841 -
Vium6389g00003 884 MobiDBLite consensus disorder prediction 265 301 - -
Vium6389g00003 884 SUPERFAMILY RING/U-box 431 480 - -
Vium6389g00003 884 Pfam Ring finger domain 431 474 IPR001841 -
Vium6389g00003 884 SUPERFAMILY FYVE/PHD zinc finger 494 570 IPR011011 -
Vium6389g00003 884 SMART ring_2 432 473 IPR001841 -
Vium6389g00003 884 MobiDBLite consensus disorder prediction 105 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6389g00003 Vium-Chr6389 9722 13670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6389g00003 519 568 C2H2 Transcription Factor Family AT3G01460 46.154 2.25e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium6389g00003 PHD 4.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6389g00003 - - gmx:100797448 1238.4