Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6388g00010 ATGGGCCGCGTTTGTGGCGGTTGGGTCTCTTGTAATTGCTGCTCTTTCAGAGATCTCCATACCAAGTATATTGGCAGCATCAATATTTTCAGCACAGAGTGTGGCCTACGAAGTGGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCATCTACGAGAAAACTTATATGCAACAATTCTTTTTCAGGACATCTCCTACTTTGATAAAGAAAGAGTTGGTGACTTGACAAGCAGGCTCACAGCAGATTGTCAACGGTTATCCCATGTGATAGGAAATGATCTTCAGCTCATATTACGCAACACTTGTCAGGGAACTGGAGCAATACTTAATTTGATGGTTTTATCTTGGCCTCTAGCATTATCTGCCTTGGTGATTTGTTGTATTTTATCTGCAATTTTCATTGTTTATGCACAGTAA 420 0.4024 MGRVCGGWVSCNCCSFRDLHTKYIGSINIFSTECGLRSGCFGILNVTLVKHLRENLYATILFQDISYFDKERVGDLTSRLTADCQRLSHVIGNDLQLILRNTCQGTGAILNLMVLSWPLALSALVICCILSAIFIVYAQ 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6388g00010 139 Pfam ABC transporter transmembrane region 34 138 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6388g00010 139 Gene3D ABC transporter type 1, transmembrane domain 23 139 IPR036640 GO:0005524|GO:0016020
Vium6388g00010 139 SUPERFAMILY ABC transporter transmembrane region 35 137 IPR036640 GO:0005524|GO:0016020
Vium6388g00010 139 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 139 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6388g00010 139 PANTHER ABC TRANSPORTER B FAMILY 32 138 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6388g00010 Vium-Chr6388 83927 88780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6388g00010 29 121 Calmodulin-binding Proteins AT2G36910 28.421 3.25e-06 43.5