Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6388g00009 ATGATCAAGTCCCCTAACCAAAATTTCCTTCGTTTTCCTCACTCTAGCATTCACTTATCCCACATTCCCAAATGCACGTTCGTACCCTACATCTCTACCAAATCCCAAATCCACTTTTTCTCCTCATTGCCACCGGGTGGCTCCAAAACCTTCCGAACCATTGCCCCAAAATCCCGGTGCCAGCACGGTCCCCTGTTCGCAAAACGGGTCGGGCTTTTGGCATCAATTCTACCCGGTGGAAGCTGGTGGGCCTTGCCGGAGCTCCGGGAAGACGGCGTGGAGCCAACGACGGCCTTGATTGCTCTCCGGCGAATATGGGAATTGGTCGCCGATGAGCGATGGGCCGCGTTTGTGGCGGTTGGGTCTCTTGTAATTGCTGCTCTTTCAGAGATCTCCATACCAAGTATATTGGCAGCATCAATATTTTCAGCACAGAGTGGTGAGACTGTGGCGTTCTCTAGGAATGCACTGTTTTTACTTCTTTTGTGCTTAACTTCAGGGATATGCAGTGGCCTACGAAGTGGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCATCTACGAGAAAACTTATATGCAACAATTCTTTTTCAGGACATCTCCTACTTTGATAAAGAAAGAGTTGGTGACTTGACAAGCAGGCTCACAGCAGATTGTCAACGGTTATCCCATGTGATAGGAAATGATCTTCAGCTCATATTACGCAACACTTGTCAGGGAACTGGAGCAATACTTAATTTGATGGTTTTATCTTGGCCTCTAGCATTATCTGCCTTGGTGATTTGTTGTATTTTATCTGCAATTTTCATTGTTTATGCACAGTAA 828 0.4614 MIKSPNQNFLRFPHSSIHLSHIPKCTFVPYISTKSQIHFFSSLPPGGSKTFRTIAPKSRCQHGPLFAKRVGLLASILPGGSWWALPELREDGVEPTTALIALRRIWELVADERWAAFVAVGSLVIAALSEISIPSILAASIFSAQSGETVAFSRNALFLLLLCLTSGICSGLRSGCFGILNVTLVKHLRENLYATILFQDISYFDKERVGDLTSRLTADCQRLSHVIGNDLQLILRNTCQGTGAILNLMVLSWPLALSALVICCILSAIFIVYAQ 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6388g00009 275 Pfam ABC transporter transmembrane region 123 274 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6388g00009 275 SUPERFAMILY ABC transporter transmembrane region 103 273 IPR036640 GO:0005524|GO:0016020
Vium6388g00009 275 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 117 275 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6388g00009 275 PANTHER ABC TRANSPORTER B FAMILY 110 274 IPR039421 -
Vium6388g00009 275 Gene3D ABC transporter type 1, transmembrane domain 97 275 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6388g00009 Vium-Chr6388 83546 88780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6388g00009 113 257 Calmodulin-binding Proteins AT2G36910 25.828 3.02e-06 46.6