Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6388g00006 ATGGCATTATCAAATATGTATGATGAAATGGTGGAACGGTTTTCAACACCCATACAAAATGTACCATCATTTGCAAGCGCATATATTCCCGCTTCTGGACATCGAATGAATCTTTCTCCTGTAACCTTTCTTGAAACTGATGTTGCTTCATTGGATGACCATGATAGTAATTTGGACATTGACAACATGTCATATGAGGAGCTTGTTGAATATTTTGAACAAATTGGCAATGTAAGCATGGGTTTGTCAGAAGAAACTATTACGCGAGTTGTGAAGGCAAAAACTTGTTTACTACCTAGTCCTTTGGATGGGGTAACTTCTCAAGAGCAAGAAATTGATCTTTGCGTAATATGTCAGGATGAATATAAGAACCAAGAAGAAATTGGAATTCTACGATGCCAACATAAATACCACGCAAATTGCATAAGGAGATGGTTACATGAAAAAAATGTTTGTCCCATCTGCAAATCAGAAGTATTAGATTTCGAAAAGACGTTGAAATAA 504 0.3611 MALSNMYDEMVERFSTPIQNVPSFASAYIPASGHRMNLSPVTFLETDVASLDDHDSNLDIDNMSYEELVEYFEQIGNVSMGLSEETITRVVKAKTCLLPSPLDGVTSQEQEIDLCVICQDEYKNQEEIGILRCQHKYHANCIRRWLHEKNVCPICKSEVLDFEKTLK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6388g00006 167 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Vium6388g00006 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 161 IPR013083 -
Vium6388g00006 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 33 160 IPR045191 GO:0061630
Vium6388g00006 167 Pfam Ring finger domain 114 156 IPR001841 -
Vium6388g00006 167 SUPERFAMILY RING/U-box 114 160 - -
Vium6388g00006 167 SMART ring_2 115 155 IPR001841 -
Vium6388g00006 167 CDD RING-H2_RNF24-like 113 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6388g00006 Vium-Chr6388 47573 48446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6388g00006 52 160 C3H Transcription Factor Family AT2G15530 46.018 3.34e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6388g00006 K19041 - vum:124843082 343.969