Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6388g00001 ATGATGAGAGAGAGGTACTGTTACAGGGAAGTGCTTCCATTCATTGCAATGGTTGCCATAGAGTTCTCCAACGTTGGTGTGAACATTCTATTCAAAGCTGCAACTCAGAAGGGATTGGGTTATTATGCCTTCATCGCTTATTCATATCTCATCTCTGTTCTCTTTCTCCTTTTGCCTTTGCCCTTCGTCTTTCGATGGTCAAGAGGCCTTCCACAGCTCAACCTCTCTCTCATCTTCAGAATTTTCCTCCTTGGAGTAATCGGAGTGGCAGCTCAACTGTGTGGCTACAAGGGACTGAATTACGCATCGCCTACGCTTGCGTCTGCTCTCAGCAACCTCATACCAGCTTTCACCTTCATATTGGCTGTCATTTTCAGGATGGAAAAGGTAGCTTTGAGAAGCTCAAGCACTCAGGCCAAAATCCTGGGTTCGTCCGTATCCATATTAGGTGCACTCATAGTTTTACTCTATAAGGGTTCCATAATCCTTTCAACATCATCTCCAACACTATCTCCTACGCCTCTTTCTCCAATGGGATCTACATCACAAACAAATTGGGTTCTTGGTGGATCCCTACTTGCCATTGAGTATCTTTTGGTTCCAATCTGGTACATTGTTCAGACCAATATTATGAAACAATACCCAGCAGAGTTTATTGTGGTGTTCCTGTACAACCTGAGCGGGACTCTGATATCTGCTCCAATTTGCTTGCTATTAGAAGAAAATTTGAGCGCTTGGAAGATAAATCCTGATATAACATTGATAGCAATTGTGTATTCGGGTTTCTTTTGCACAGGCCTAAGTAGTTTGGTGCACACTTGGGGCATTCATCTTAAAGGCCCAGTTTATGTTTCAATCTTTAAGCCTCTGTCCATTGTGGTTGCAGCCGTTTCGAGTGTCATCTTCCTTGGTGATGCTCTGTATTTTGGAACTCTTGTTGGAGCAGTGATACTCTCGTTTGGATTTTATGCTGTCATATGGGGTAATGCAAAACAAGATGAATTGAGTGAGGACTTTGACATGCGTCCTTCGTCAAGTAGTAAGAGTCCTTTGTTGCTGAGCTACAAAGGGAAAGATAACGAAGAGACCACCCATTGTTGA 1101 0.4323 MMRERYCYREVLPFIAMVAIEFSNVGVNILFKAATQKGLGYYAFIAYSYLISVLFLLLPLPFVFRWSRGLPQLNLSLIFRIFLLGVIGVAAQLCGYKGLNYASPTLASALSNLIPAFTFILAVIFRMEKVALRSSSTQAKILGSSVSILGALIVLLYKGSIILSTSSPTLSPTPLSPMGSTSQTNWVLGGSLLAIEYLLVPIWYIVQTNIMKQYPAEFIVVFLYNLSGTLISAPICLLLEENLSAWKINPDITLIAIVYSGFFCTGLSSLVHTWGIHLKGPVYVSIFKPLSIVVAAVSSVIFLGDALYFGTLVGAVILSFGFYAVIWGNAKQDELSEDFDMRPSSSSKSPLLLSYKGKDNEETTHC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6388g00001 366 MobiDBLite consensus disorder prediction 341 366 - -
Vium6388g00001 366 PANTHER WAT1-RELATED PROTEIN 12 341 IPR030184 GO:0016020|GO:0022857
Vium6388g00001 366 Pfam EamA-like transporter family 25 155 IPR000620 GO:0016020
Vium6388g00001 366 Pfam EamA-like transporter family 202 326 IPR000620 GO:0016020
Vium6388g00001 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 158 - -
Vium6388g00001 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 235 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6388g00001 Vium-Chr6388 12750 18235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6388g00001 5 360 Nodulin-like Gene Family AT5G40240 53.352 4.15e-131 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6388g00001 - - gmx:100805667 545.428