Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6372g00004 ATGACACAGCTACCATCATTATCACGTTCTTCTTCTTCTTCTTCCACTTGTGAAGGGACCCATGATGTGTTCCTCAGTTTCAGAGGCGATGACACTCGAAGTGGCTTCACTGGCAACCTATACAAGTCTCTTTGTGACAGGGGAATTCACACCTTCATAGATGATGAGGGACTTAGAAAAGGGGAAGAGATTAGACCTGCTCTTTTCAAGGCTATTGAGCAGTCTAGAATTGCCATTGTTGTTTTCTCTGAAAATTATGCTGACTCAACTTACTGTCTTGAAGAACTTGTCGTGATCCTTGAGTGCATAATGAGAAAGGGGCGATTGGTTTGGCCAGTGTTTTACGGGGTTACTCCATCTTCTGTGCGGTTTCAGAAGGGTTCTTATGGGAAAGCATTGGCCAAGCATGGAGAAAGATTCAAGAATGACCAGGAGAAGCTGCAAAAATGGAAGCTAGCTCTTCAAGTAGCTGCTGGTTTGTCCGGTTCGCATTTCAAGCTCAAACAAGGGTATGAACATGAACTTATTCGGACAATTGTTGAAGAGGTTTCCAAAAAGATAAATCGTAGCCCTTTACACGTGGCTAATTATCCAATTGGATTGGAGTCTAGAGTGCAAGAACTGAAGTTACTTTTGGATGTTGGATCTAATTGGGGAGTAAGCATGGTTGGGATTTTTGGAATCGGGGGAATAGGTAAGACTGCAATTGCATGTGCAGTGTACAATGCCATTGCTGATAAATTTGATGTTCAGTGTTTCCTTGGTGATATTAGACAAAAATCAATGAAGTATGACTTAGTACAACTTCAGGAGACAGTACTTTCTGAAATGGTTGGCGAGAAAAGTATCAAGTTGGGGAGTATTAATAGGGGAATGGCAGTTATGAAAAGCAAGCTTCAAAGAAAGAAAGTTCTTTTGATTCTTGATGATGTTGATAAATTGGAGCAATTAAAGGCACTTGCTGGTGATCCTTCCTGGTTTGGTGATGGCAGCAAAATCATTGTCACGACAAGGAACAGACGTTTTTTACGAGTACATGGTGTTGAAAGAACATACGAAGCCAAAGGGTTGGATGATAAAGAAGCTCTTGAGTTGTTTAGTTGGCATGCTTTTAAAAGCAATGAAGTTGGTCCAGGTTACTTGGATATCTCTAAGCGTGCAGTATTTCATTGCAATGGCCTTCCATTGGCTTTAGAAATAATAGGTTCTAACTTGAATGGTATAACAATGTCTGAATGGGAAGCCGCATTAGATACCATTGAAAGAATTCCAGATGAAGATATTCAAGAAAAACTAAAAGTAAGCTACGATGGTTTGAAGGGAAATGAAAAGGAAGTTTTCCTTGACATGGCTTGTTTCTTTAGAGGCTACCATTTGAAAGATGTCATAAATTTATTGCTCCAAAGTCGTGGTTTCTCACCCGAGTATGTTATTCGCATGTTGGTAGATAAATCTCTCATAAAAATCGATCAATATGGTTTTGTGCAAATGCATAACTTGGTAGAGGACATGGGCAGAGAAATAGTAAGGCAAGAATCACCATCAGAGCCTGGAAAACGCAGTAGATTATGGCTTTATGAGGATATTGTTGATGTTTTAGAAAATGACAAGGGAAGTGATACAATTGAAGTAGTCATGCTACACTTGCCAAAGAATAGGGAAGTTCTATGGAATGGAAGTGAGCTCAAGAAGATGACAAACTTAAAAATGCTAACTATTGAAAATGCTGACTTTTCTAGAGGCCCTGAATATCTCCCAAGTAGTTTGAGAGTACTAAAGTGGCGGGGATATCCTACACAGTCTCTGCCACCTGAATATGATCCAAGGAGACTTGTTATGTTAGACTTGTCTATGAGTCGCAATATATTGGGCAAACAACTCAACCTCATGAAGTTCGAGTCTTTGAGTGAAATGGTTTTAAGAGGTTGCAGATTCATAAAACAGGCACCTGACATGTCTGGAGCCAAAAATTTAAGAAAGCTTTGTCTTGATAACTGCAAGAATTTAGTAGAAGTTCATAATTCCATCGGACTTCTTGACAAACTAACATGGTTCACCGCTATTGGATGCACCAGTCTAAGGACTCTTCCCCATAGCTTCAAGTTAACATCACTTGAATATCTGTCTCTCAGAAAATGTTCAAGCCTCCAGCGTTTGCCAAACATATCAGAAGAAATGAAACATATGAAAAATCTTGACCTTTGTGGAACTGCTATTGAACAATTGCCATATTCGTTTAGGAAACTCACTGGGCTTAAATATTTAGTACTAGACAAGTGCAAGAGGCTTAATCAGATCCCAATAAATATTTTGATGTTACCAAAACTTGAGAGATTGACAGCTGTAAAATGTGGAAGATATGTAAATTTGATCCTTGGTAAAAGTGAAGAACAAGTAAGATTGGCTTCATCTGAGTCTTTGAGAGATTTTAGGTTAAACTACAATGATTTGACACCCACCAGCTTCCCCAATGTAGAGTTCTTAGTTCTAACTGGCTGTGCTTTCAAAGTTCTTCCTGAATGCATCGGCCAATGTCGCTTTCTAAAGAATCTAGTTTTGGACAACTGCAAGGAGCTTCAAGAAATCAGAGTGGTTCCTCCTAAGATAAAATATCTGTCGGCAATAAACTGCACATTATTGTCTCATGAGTCTCAAAACATGTTGTTGAATCAGAAATTACATGAGGGTGGGGGAACAGATTTTTCCCTTCCGGGAACAAGGTTACCAGAATGGTTTGATCATTGTACTAGGGGACCATCCCTGTCTTTCTGGTTTCGTAACAAATTTCCAAGGATGACTCTAGCTGTTGTTGGAGTTTTAGACAAGCAAGGCAGTTTTCCCATGTCAAGATTCCACTTTCTCAGCAATGGCATTCAAAAGCTGCATTGCCATTTCACTGTGCAATCAAAATTAATCACATATCATATATTCTTGTCCGATGTGCTGCTAAAGTCCTACAATGGTGGATTGGAAAGTGTGTATGGGGAGGATGGGTGGAACCATGTTGAGGTTTCATACGTGGGACCAAGAGTCTTTTCACATTCATGCAGAACCAAGAAAGGAACCATTAAATGGATGGGGGTTCATGTTCACAAGCAAAAAACAAACATGCAAGATATTCGGTTCATAAATCCTTGGTTTCCGAAAAGAGCACATAGTGAAGTTTCCAAGGCTGATCTGCAAGAAAGTTTTCAGCCTTTGCCCAAAAGAATCCGTGTATCACATCGCAAGGAAATTTGTGAGGCACCACAGATGAAGCAGCATGAAGCTAACAGCAGTTATCACGGTGTATCACAGAGGCTATGGTTGGCAATTTGTAGCATTGCAGCTCCTCTGAATGTTAAAGTACTGATGTGGAATATTTGTCAGGATGATTTGCCAACTTTTGAATACCTTTTCAGGAGAAAGCTTGTACTTAGTCCGCTCTGCCCCATATGTGGAACGGAGCCTGAAACTGTTGAACATGTGTTCCTGTTTTGTCCATGGACACGACCCCTTTGGTTTGGAAGTGATTTCCAGTGGTGCGTTGATGTTAAAGAAGTTCAAAGCTTTCAACTTTGGCTTTGGCATAAACTGATGGAGATTCAAAGGGTATATCCAGAAAATGCCAACCAAATATCGGCTCAGGTAGGAAGCATTTGTTGGTCTATCTGGAAAGGAAGGAATGAATTTGTTCTTGAAGGCAAACCTGTCAATCCTTTGATTTTAAGGTAG 3714 0.3996 MTQLPSLSRSSSSSSTCEGTHDVFLSFRGDDTRSGFTGNLYKSLCDRGIHTFIDDEGLRKGEEIRPALFKAIEQSRIAIVVFSENYADSTYCLEELVVILECIMRKGRLVWPVFYGVTPSSVRFQKGSYGKALAKHGERFKNDQEKLQKWKLALQVAAGLSGSHFKLKQGYEHELIRTIVEEVSKKINRSPLHVANYPIGLESRVQELKLLLDVGSNWGVSMVGIFGIGGIGKTAIACAVYNAIADKFDVQCFLGDIRQKSMKYDLVQLQETVLSEMVGEKSIKLGSINRGMAVMKSKLQRKKVLLILDDVDKLEQLKALAGDPSWFGDGSKIIVTTRNRRFLRVHGVERTYEAKGLDDKEALELFSWHAFKSNEVGPGYLDISKRAVFHCNGLPLALEIIGSNLNGITMSEWEAALDTIERIPDEDIQEKLKVSYDGLKGNEKEVFLDMACFFRGYHLKDVINLLLQSRGFSPEYVIRMLVDKSLIKIDQYGFVQMHNLVEDMGREIVRQESPSEPGKRSRLWLYEDIVDVLENDKGSDTIEVVMLHLPKNREVLWNGSELKKMTNLKMLTIENADFSRGPEYLPSSLRVLKWRGYPTQSLPPEYDPRRLVMLDLSMSRNILGKQLNLMKFESLSEMVLRGCRFIKQAPDMSGAKNLRKLCLDNCKNLVEVHNSIGLLDKLTWFTAIGCTSLRTLPHSFKLTSLEYLSLRKCSSLQRLPNISEEMKHMKNLDLCGTAIEQLPYSFRKLTGLKYLVLDKCKRLNQIPINILMLPKLERLTAVKCGRYVNLILGKSEEQVRLASSESLRDFRLNYNDLTPTSFPNVEFLVLTGCAFKVLPECIGQCRFLKNLVLDNCKELQEIRVVPPKIKYLSAINCTLLSHESQNMLLNQKLHEGGGTDFSLPGTRLPEWFDHCTRGPSLSFWFRNKFPRMTLAVVGVLDKQGSFPMSRFHFLSNGIQKLHCHFTVQSKLITYHIFLSDVLLKSYNGGLESVYGEDGWNHVEVSYVGPRVFSHSCRTKKGTIKWMGVHVHKQKTNMQDIRFINPWFPKRAHSEVSKADLQESFQPLPKRIRVSHRKEICEAPQMKQHEANSSYHGVSQRLWLAICSIAAPLNVKVLMWNICQDDLPTFEYLFRRKLVLSPLCPICGTEPETVEHVFLFCPWTRPLWFGSDFQWCVDVKEVQSFQLWLWHKLMEIQRVYPENANQISAQVGSICWSIWKGRNEFVLEGKPVNPLILR 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6372g00004 1237 SUPERFAMILY "Winged helix" DNA-binding domain 427 534 IPR036390 -
Vium6372g00004 1237 SUPERFAMILY L domain-like 542 886 - -
Vium6372g00004 1237 ProSiteProfiles TIR domain profile. 19 187 IPR000157 GO:0007165
Vium6372g00004 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 449 IPR027417 -
Vium6372g00004 1237 PRINTS Disease resistance protein signature 298 312 - -
Vium6372g00004 1237 PRINTS Disease resistance protein signature 222 237 - -
Vium6372g00004 1237 PRINTS Disease resistance protein signature 391 405 - -
Vium6372g00004 1237 PRINTS Disease resistance protein signature 700 716 - -
Vium6372g00004 1237 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 769 IPR044974 GO:0006952
Vium6372g00004 1237 Gene3D Ribonuclease Inhibitor 724 924 IPR032675 -
Vium6372g00004 1237 Pfam TIR domain 21 190 IPR000157 GO:0007165
Vium6372g00004 1237 Gene3D - 18 184 IPR035897 -
Vium6372g00004 1237 Gene3D Ribonuclease Inhibitor 547 723 IPR032675 -
Vium6372g00004 1237 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 189 - -
Vium6372g00004 1237 Pfam NB-ARC domain 203 432 IPR002182 GO:0043531
Vium6372g00004 1237 Pfam zinc-binding in reverse transcriptase 1100 1167 IPR026960 -
Vium6372g00004 1237 SMART till_3 20 160 IPR000157 GO:0007165
Vium6372g00004 1237 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Vium6372g00004 1237 Gene3D - 185 349 IPR027417 -
Vium6372g00004 1237 Gene3D - 356 440 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6372g00004 Vium-Chr6372 56929 62695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6372g00004 21 784 WRKY Transcription Factor Family AT4G12020 32.870 2.24e-89 317