Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6372g00001 ATGGACCTGACCTCCAGCTGTACCCACACAATACAAACCTTCGATGCTGATACTAAGACCACACCACCCGTCAACCCCACCAATAATACCACCCCAAAGTCTCTATCTTTCACCAACGGCACCCCAAAGCGCCACCCCTCCACCACCGCCGCTCCACCGCCTCAACCACCCTCCATGGTCGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAGCCTAGGTGGCCATGCACTTGATGGCTGTGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGATCCTCGCTCCCTCAAGTGCGCCGCCTGTGGCTGCCATCGCAACTTCCACCGCCGTGATCCTCAGGAACACAGTAACCTCAACAACAACAACAACATTCACGGCGCCAACCCCAACACCGCCGCCACCACGAACAATAACCCGACTTTCCTAAGCTGCATCTACACCCCTTCGGCACCGGCACCAATCTCTCAGCGAGCCATGAGCCAAAGCACGAGTCCCAGCCTGAGTTCGAGCCCGAGCCACAGTCCGAGCCCAATGTCAAGCCCCTCACCTCCTCCACTCTCCCACGTGCCACCGTACCACGCTTCGGCACCCCACATGCTTTTAGCCCTCGGCACTGGCTACTCTACTCCCTCCGATGAACGCCCCCACCACCGAGGCCTAACCTTTTCGAGCGTGATGTTGAAGAGCGAGAACCCGAAGAAGAGGTACAGGACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCAAAACTTCTCTGAGAAACTGGGGTGGAGAATGCAGAAAGGGGATGATGGATTGGTCCAGCAATTCTGCAATGACATTGGGGTCTCTAGAGGGGTCTTCAAGGTGTGGATGCACAACAACAAGAACACCTTTAGGAGAAGATTGGATCAAGGGGAAAATGCAAATCCAAACGCAAATGCAAATTCTCCTCAAAGTATCGGAGATCATGATGACGGCAATAACACCAGTGGTGGAGGTGGATTTGATAGTGATATCAACAACCCCTACAACCCAAGTAGCAACAACAATGACATTCACATGAATGAAGGAGATGGATGTGGCAATGTTCATGTCTCTCTTAATGGACTGTCATCTTAG 1110 0.5342 MDLTSSCTHTIQTFDADTKTTPPVNPTNNTTPKSLSFTNGTPKRHPSTTAAPPPQPPSMVVTYKECLKNHAASLGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQEHSNLNNNNNIHGANPNTAATTNNNPTFLSCIYTPSAPAPISQRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHMLLALGTGYSTPSDERPHHRGLTFSSVMLKSENPKKRYRTKFSKEQKEKMQNFSEKLGWRMQKGDDGLVQQFCNDIGVSRGVFKVWMHNNKNTFRRRLDQGENANPNANANSPQSIGDHDDGNNTSGGGGFDSDINNPYNPSSNNNDIHMNEGDGCGNVHVSLNGLSS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6372g00001 369 SUPERFAMILY Homeodomain-like 231 297 IPR009057 -
Vium6372g00001 369 FunFam Zinc-finger homeodomain protein 2 224 297 - -
Vium6372g00001 369 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Vium6372g00001 369 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 294 - -
Vium6372g00001 369 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Vium6372g00001 369 MobiDBLite consensus disorder prediction 179 194 - -
Vium6372g00001 369 MobiDBLite consensus disorder prediction 156 196 - -
Vium6372g00001 369 MobiDBLite consensus disorder prediction 301 352 - -
Vium6372g00001 369 Gene3D - 227 296 - -
Vium6372g00001 369 MobiDBLite consensus disorder prediction 14 57 - -
Vium6372g00001 369 MobiDBLite consensus disorder prediction 301 354 - -
Vium6372g00001 369 MobiDBLite consensus disorder prediction 156 178 - -
Vium6372g00001 369 MobiDBLite consensus disorder prediction 119 138 - -
Vium6372g00001 369 MobiDBLite consensus disorder prediction 113 138 - -
Vium6372g00001 369 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 114 IPR006456 -
Vium6372g00001 369 NCBIfam homeobox domain, ZF-HD class 236 293 IPR006455 -
Vium6372g00001 369 MobiDBLite consensus disorder prediction 14 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6372g00001 Vium-Chr6372 8141 9775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6372g00001 59 306 ZF-HD Transcription Factor Family AT1G69600 46.718 2.55e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium6372g00001 ZF-HD_dimer 3.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6372g00001 - - vum:124843063 676.011