Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6370g00023 ATGGAACGCATCGTTGGCCGCAAGTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGCGAAATCTACCTCGCGACGCATATTGACACCTTCGAGATCGTCGCCGTCAAGATCGAGAATAGAAAAACGAAGCATCCGCAACTTCTTTACGAGGCAAAGCTCTACAATATTCTTCAAGGAGGAAGTGGAATTCCGAACATAAAATGGTCTGGCATAGACGGGGAGGAAAATGTGCTTGTTCTTGACTTGCTTGGGCCGAGTCTTGAAGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGGATAGAATATGTGCATTCTAAAGGATTTCTGCATAGGGATATTAAACCCGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATACCGGGAATCGGGTACCAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACCGGCACAGCCCGATATGCAAGTTGTAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAATCTCTAGGATATGTACTTTTGTATTACCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCTACGAAGAAACAAAAGTATGATAAAATATGTCAGAAGAAAGTTTCAACTCCTATTGAGGTACTTTGCAAAACTCATCCCGTAGAGTTTGCTTCGTACTTCCATTACTGCCACTCTTTGACATTTGATCAGCGACCTGATTATGGATTCTTAAAGCGCCTATTTCGGGACCTATTTACTCGAGAAGGCTATGAATTTGATTACGTTTTTGATTGGACCATTTTAAAGTATCAGCAATCTCAAAAGAGTGCAGTGCTCCCTCCACTATCTCCAGTTCCAGGAGCAAGTAACAGTCGAGCAATTCCAATGAATATTGACCATCATCAAGGGCATGTTATGGAGCGGAACAGAGCAGGCGATGCTGCCGGTTCTGGTGTTAAAATCCAGTTTAAATCACCAGGGGGTAAAAATGTGAGCTATGAGAATCCACTTGACAAAAATATTTATGGAGAAGCAGATATACCCGCTGCTTCATACTCTCCTGCTAGTACTTCTATAAGGAACTCCTTGAAGCTATCTTTTTCTGCTGAAGCTTCCAACCCTGGACACGGGCAAGGCAGTAAAATTGGCCCTTCAAGTAGCTGGATGTCATCTCTGCAGCACACGTCTTCTGCTAAATGA 1275 0.4353 MERIVGRKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENRKTKHPQLLYEAKLYNILQGGSGIPNIKWSGIDGEENVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRESGTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYYLRGSLPWQGLKAATKKQKYDKICQKKVSTPIEVLCKTHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFTREGYEFDYVFDWTILKYQQSQKSAVLPPLSPVPGASNSRAIPMNIDHHQGHVMERNRAGDAAGSGVKIQFKSPGGKNVSYENPLDKNIYGEADIPAASYSPASTSIRNSLKLSFSAEASNPGHGQGSKIGPSSSWMSSLQHTSSAK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6370g00023 424 MobiDBLite consensus disorder prediction 394 424 - -
Vium6370g00023 424 CDD STKc_CK1_delta_epsilon 8 282 - -
Vium6370g00023 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6370g00023 424 PANTHER CASEIN KINASE-RELATED 8 335 - -
Vium6370g00023 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6370g00023 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6370g00023 424 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Vium6370g00023 424 FunFam Casein kinase I isoform delta-like 1 339 - -
Vium6370g00023 424 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vium6370g00023 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vium6370g00023 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6370g00023 Vium-Chr6370 105851 109949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6370g00023 5 215 EF-hand Containing Proteins AT4G23650 30.415 7.32e-16 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vium6370g00023 Pkinase 6.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6370g00023 K08960 - gmx:100779936 786.949