Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6370g00007 ATGACTGAGCAACCTGGCTCAGAATCATCCTCCTCTGCTTCCACTCGCAAGCACTCGTCTCCCGAGGCCCATTTGGCAGGTCCGGATCACAAAAAGCCCAAGCAGGCCCGAGATAGCAGCAGCAAGCACCCCGTTTACAGAGGAGTCCGAATGCGGGCCTGGGGAAAGTGGGTATCCGAAATCCGCGAGCCGAGGAAGAAGAACCGGATCTGGCTCGGCACCTTCGCCACCGCTGAGATGGCAGCGCGTGCTCACGACGTTGCGGCGCTCGCCATCAAAGGCAACTCCGCCATTCTCAACTTCCCCGAGCTCGCCGGCTCCCTGCCGCGGCCCGACTCCAACTCGCCGCGGGATGTTCAGGTGGCGGCGGCAAAGGCCGCCGCCATGGAGGTGATGGATCCCCCGACGACTCCATCGTGGACGCTGTCGCAGTCGTCTTCGTCGTCCTCGGGCGAGACGTCGACGGCGGATGAGCTGGGAGAGATAGTGGAGCTGCCGAGTCTGGGGACGAGTTTGGAAATACCGGAACGGAGTGAGGAGGTGGTGTTCGTGGAGCCGGTGGGCGGGTGGCTGTATTCTGAGGCGTGGTGTGACGGCATTTATGGTGAGAGGGAGTGTGGGGGTTATTTTATTGGAGATGAGATTTCAATGCAGGAGTCAGAGAGCATGATTCTTTGTGGCTTTGAGGGTTCCTTGTGGCAGCATTAA 708 0.6017 MTEQPGSESSSSASTRKHSSPEAHLAGPDHKKPKQARDSSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSAILNFPELAGSLPRPDSNSPRDVQVAAAKAAAMEVMDPPTTPSWTLSQSSSSSSGETSTADELGEIVELPSLGTSLEIPERSEEVVFVEPVGGWLYSEAWCDGIYGERECGGYFIGDEISMQESESMILCGFEGSLWQH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6370g00007 235 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Vium6370g00007 235 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Vium6370g00007 235 MobiDBLite consensus disorder prediction 136 156 - -
Vium6370g00007 235 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vium6370g00007 235 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Vium6370g00007 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 171 - -
Vium6370g00007 235 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vium6370g00007 235 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vium6370g00007 235 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Vium6370g00007 235 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vium6370g00007 235 MobiDBLite consensus disorder prediction 1 19 - -
Vium6370g00007 235 MobiDBLite consensus disorder prediction 22 45 - -
Vium6370g00007 235 MobiDBLite consensus disorder prediction 133 157 - -
Vium6370g00007 235 MobiDBLite consensus disorder prediction 1 45 - -
Vium6370g00007 235 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6370g00007 Vium-Chr6370 41447 42883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6370g00007 5 196 AP2-EREBP Transcription Factor Family AT5G11590 55.665 2.25e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium6370g00007 AP2 6.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6370g00007 K09286 - gmx:100778201 313.923