Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6362g00002 ATGGACGTGGCTTCTTCTCTTTCGATTTTCTCAAAATTCAGAGTCTCAGGCGAGGTTTTCATCCATTGTTTGGGGGACGACATCCATAGAAATTTCGTTTCACATCTGAGTTCTTCTCTTCTACAAGCTGGAGTAAAACCTTCCGTAGTTGCTGTGGAAATATTGTCGGAAAAATTTATGCCATCAATTACAAGGTTTCAGATTGGAATAGTTGTTTTCACCACAGCATACATTGAATCTTATCGGTGTGTTGAAGACCTTCTGAGAATCATTGAATGTCACGAAAATCACGGCCTAATAGTTATGCCCGTGTTTTACGATATTGACCCATCCGATCTATTTGATCTCGAAATGGATTCATCTTACGATATTGACCCATCCGATCTATTAGATCTCGAAATGGTTTCATCTTACGATGACCCATCCGATCTATTTGATCTCGAAATGGATTCATCCTATGTACGTGATCCGATAAAGGGTGGATTCAAAAAGGATTCATCGAAAGTATATAATCTTAGAAGTGCGAGGAGGAGCGTAAAGACGACCGTAGAGGGGACTCAGATGGAGGCCGAAAGATTCAACTATCCAATCATACTATACACTTCTGCGGGGAGTCACGCACTCAACAGGGTTGCAAATTTGCCTACTTGGGATGAGAGCAAACACAGGAATGATGCTGAACTAGTGGAGGAAATTGTTAAGTCTGTTCTCGCTAAACTAGACCGCGCCTTGACTGTAACTAAATTTCCTGTTGAATTAGAAACCCAAGTGAAAAATGTGATTGGATTGTTTGAAAATCAACCCAACAAAGTCTGTATGATAGGGATATGGGGAATGGGAGGATCAGGTAAAACTACCTTAGCGAAAGCCATCTACAATAAAATTCCTTTTACATTTGGTGATAAAAGTTTCATTCTAGATATTAGAAAAGTTTGTCAAACATATGGCAGAAGAGGCCTTGTTCAATTACAAGAGCAACTTCTTTCAGATGTCCTTAAATATGTGAAAATAGGGAGGGGTGAGATAGAAAAACCTACGATCGAGAACCGTCTTTCTGGAAAAAAGTTGTTCATTGTGCTTGACGATGTGAATGAGATAAACCAACTAAAACAACTATGTGGAAGCGGTAAATGGTTTCGTGCAGGAAGTGTAATAATCATTACGACTAGACATTTAGACCTGCTCTATCAACAAAAAGTTGATTATGTTTATGAGATGGATGAACTGAACGAAAATGACTCGGTTGAACTTTTTAGTTGGCATGCTTTTAGAGAAGCAAAACCAAGAGAAAACTTCAATAAACTTGCAAGATCAGCCGTTGCTTATTGTGGTGGACTACCACTCGCTCTTGAAGTCCTTGGTTCTTATTTGAGTAAGAGGTCAGAGAATGAATGGAGAAGTGTATTGTCAAAACTAGAAATAATTCCCAATACTCAAATTCAGAACATCCTAAGAATAAGCTTTGACGGCTTACGTGAAAAGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGGAAAGATAGAGGCTATGTCACGGAGATACTAAATGGCTGTGGACTGGATGCTGATTTTGGAATAAAAGTTCTTATAAAACGTGGTCTTTTAAAAATTGAAAAGAAGAATAAACTTGGAATGCATCATTTGCTTCGGGACATGGGACGAGAGATTGTGCGTCAAACTTCAACAATGCAACCTGGGAAGCGCAGTAGATTGTGGCTTCCCAAGGATGTACTTGATGTATTGACAAAGAATACTGGGACAGAAGCGATTGTGGGATTGTCTCTGAACACTAAGTTAACGAACAGTGATTCCTTCAAAGCTGATGCTTTTAAGGAAATGAAGACGTTGAGATTCTTGCAACTTGGTCATGTACGGCTAACTGGAGATTACGGCTATCTTTCTAAGCAACTGAGATGTATCTCCTGGCAAGGATTTTCTTTAGAGCACATACCTAACAACTTTTACTTGGAAGGTGCAATTGTAATGGATTTCCAGCACAGTAATCTCAGACTACTGTGGAAAGAACCCACGGTTTTACCGTGGCTAAAAATCCTCAATCTTAGTCATTCAAAGTACTTGACAGAAACCCCTGACTTTTCAAAATTACCCAGTCTTGAAAAGCTCATTCTCAAGCATTGTGTGAGTTTGGGCAAGGTACACCAATCGATTGGAGATTTACACAATCTTCTACTAATAAATTTGAAAGGCTGTACAAACCTAAGCAATCTCCCAAGTGAGACATATAAGTTGAAATCCTTGAAAACTCTTATCCTATCTGGCTGTCTGAAGATTGATATCTTTAAAGAAGATATAATGCACATGAAATCCTTGAAAACTCTAATTTCTCACAATACTGCTGTGAAACAAGTTCCCATTTCAGTTGTAAGCTCAAAAAGCATTGGATATATACAGGTAGACGAAGGAAAGGGATTATCACGTACTGTTCTTCATTCTATCATTTTGTCTTGGATGTCCCATACTTTTAATCCCCTGTATCATATGCGTCCGTTTCGTGGCATTTCACCATCTCTAGCTTCCATGAATGTGGAGCATAATGATTTGGTAGATCTAGCTCCAGTCCTTAGAAGCATTTTAAATCTGCGTACTGTCTTAGTGCAATGTGTCACGGAGTATCCAATACTTCAACAAGTAACAGCTATTTTGGAAGAAGTTCGTTGTGTAACTTGGACTACATCTACACAACTTTCCAACCATCCATTCAGTCCATATTTGATTCAAATTGGAGGTTATCAAGAAGAAGTCTTCAACACTCTCCGCAAAAGCATTTATGATGAGGAATTGGCAGCCAGACAGACTCGTAAAGTTTTTGTCCCTAGTGACAATTATCCTCATTGGTTGGCTTATAAGAATGAGGGACACTCAGCCAAATTCACCGTGCCTGACAATTTTCACATGAATGGAATGATTTTGTGTGTTGAGCATTTATCACGCTTGGGAGACCCAACTCAATATCTTAGTTGTGTCTTAATGGTTAATTACACAAAGTGCATAATCCAGTTATTCAATCGAGAAACACTAACGTCCTTGAATGATGTTGATTGGCAGGGCGTGATATCACATCTGGGATATGGAGACAAGTTGGAGATTTTTATTATTTTTGAGAAAGGATTTGAAGTCCAGAAGACAGCTGTCTATCTAGTGTGTAATGATCAATTGACAGAAAGTCAATGTAACGAGCCCTAA 3213 0.3869 MDVASSLSIFSKFRVSGEVFIHCLGDDIHRNFVSHLSSSLLQAGVKPSVVAVEILSEKFMPSITRFQIGIVVFTTAYIESYRCVEDLLRIIECHENHGLIVMPVFYDIDPSDLFDLEMDSSYDIDPSDLLDLEMVSSYDDPSDLFDLEMDSSYVRDPIKGGFKKDSSKVYNLRSARRSVKTTVEGTQMEAERFNYPIILYTSAGSHALNRVANLPTWDESKHRNDAELVEEIVKSVLAKLDRALTVTKFPVELETQVKNVIGLFENQPNKVCMIGIWGMGGSGKTTLAKAIYNKIPFTFGDKSFILDIRKVCQTYGRRGLVQLQEQLLSDVLKYVKIGRGEIEKPTIENRLSGKKLFIVLDDVNEINQLKQLCGSGKWFRAGSVIIITTRHLDLLYQQKVDYVYEMDELNENDSVELFSWHAFREAKPRENFNKLARSAVAYCGGLPLALEVLGSYLSKRSENEWRSVLSKLEIIPNTQIQNILRISFDGLREKEKDIFLDVCCFFIGKDRGYVTEILNGCGLDADFGIKVLIKRGLLKIEKKNKLGMHHLLRDMGREIVRQTSTMQPGKRSRLWLPKDVLDVLTKNTGTEAIVGLSLNTKLTNSDSFKADAFKEMKTLRFLQLGHVRLTGDYGYLSKQLRCISWQGFSLEHIPNNFYLEGAIVMDFQHSNLRLLWKEPTVLPWLKILNLSHSKYLTETPDFSKLPSLEKLILKHCVSLGKVHQSIGDLHNLLLINLKGCTNLSNLPSETYKLKSLKTLILSGCLKIDIFKEDIMHMKSLKTLISHNTAVKQVPISVVSSKSIGYIQVDEGKGLSRTVLHSIILSWMSHTFNPLYHMRPFRGISPSLASMNVEHNDLVDLAPVLRSILNLRTVLVQCVTEYPILQQVTAILEEVRCVTWTTSTQLSNHPFSPYLIQIGGYQEEVFNTLRKSIYDEELAARQTRKVFVPSDNYPHWLAYKNEGHSAKFTVPDNFHMNGMILCVEHLSRLGDPTQYLSCVLMVNYTKCIIQLFNRETLTSLNDVDWQGVISHLGYGDKLEIFIIFEKGFEVQKTAVYLVCNDQLTESQCNEP 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6362g00002 1070 Gene3D - 14 238 IPR035897 -
Vium6362g00002 1070 Pfam TIR domain 19 112 IPR000157 GO:0007165
Vium6362g00002 1070 Gene3D - 408 492 IPR042197 -
Vium6362g00002 1070 SUPERFAMILY L domain-like 607 872 - -
Vium6362g00002 1070 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 116 IPR035897 -
Vium6362g00002 1070 Pfam NB-ARC domain 254 474 IPR002182 GO:0043531
Vium6362g00002 1070 Gene3D - 239 403 IPR027417 -
Vium6362g00002 1070 Gene3D Ribonuclease Inhibitor 594 894 IPR032675 -
Vium6362g00002 1070 ProSiteProfiles TIR domain profile. 15 151 IPR000157 GO:0007165
Vium6362g00002 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 501 IPR027417 -
Vium6362g00002 1070 PRINTS Disease resistance protein signature 273 288 - -
Vium6362g00002 1070 PRINTS Disease resistance protein signature 751 767 - -
Vium6362g00002 1070 PRINTS Disease resistance protein signature 350 364 - -
Vium6362g00002 1070 PRINTS Disease resistance protein signature 443 457 - -
Vium6362g00002 1070 SUPERFAMILY "Winged helix" DNA-binding domain 479 584 IPR036390 -
Vium6362g00002 1070 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 783 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6362g00002 Vium-Chr6362 6413 11074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6362g00002 207 797 WRKY Transcription Factor Family AT4G12020 31.363 6.45e-69 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6362g00002 - - vun:114167037 1398.26