Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6362g00001 TTACCAAATNACTTCAATAAACTTGCAAGATCAGCCGTTGCTTATTGTGGTGGACTACCACTCGCTCTTGAAGTCCTTGGTTCTTATTTGAGTAAGAGGTCAGAGAATGAATGGAGAAGTGTATTGTCAAAACTAGAAATAATTCCCAATACTCAAATTCAGAACATCCTAAGAATAAGCTTTGACGGCTTACGTGAAAAGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGGAAAGATAGAGGCTATGTCACGGAGATACTAAATGGCTGTGGACTGGATGCTGATTTTGGAATAAAAGTTCTTATAAAACGTGGTCTTTTAAAAATTGAAAAGAAGAATAAACTTGGAATGCATCATTTGCTTCGGGACATGGGACGAGAGATTGTGCGTCAAACTTCAACAATGCAACCTGGGAAGCGCAGTAGATTGTGGCTTCCCAAGGATGTACTTGATGTATTGACAAAGAATACTGGGACAGAAGCGATTGTGGGATTGTCTCTGAACACTAAGTTAACGAACAGTGATTCCTTCAAAGCTGATGCTTTTAAGGAAATGAAGACGTTGAGATTCTTGCAACTTGGTCATGTACGGCTAACTGGAGATTACGGCTATCTTTCTAAGCAACTGAGATGTATCTCCTGGCAAGGATTTTCTTTAGAGCACATACCTAACAACTTTTACTTGGAAGGTGCAATTGTAATGGATTTCCAGCACAGTAATCTCAGACTACTGTGGAAAGAACCCACGGTTTTACCGTGGCTAAAAATCCTCAATCTTAGTCATTCAAAGTACTTGACAGAAACCCCTGACTTTTCAAAATTACCCAGTCTTGAAAAGCTCATTCTCAAGCATTGTGTGAGTTTGGGCAAGGTACACCAATCGATTGGAGATTTACACAATCTTCTACTAATAAATTTGAAAGGCTGTACAAACCTAAGCAATCTCCCAAGTGAGACATATAAGTTGAAATCCTTAAAAACTCTTATCCTATCTGGCTGTCTGAAGATTGATATCTTTAAAGAAGATATAATGCACATGAAATCCTTGAAAACTCTAATTTCTCACAATACTGCTGTGAAACAAGTTCCCATTTCAGTTGTAAGCTCAAAAAGCATTGGATATATACAGGTAGACGAAGGAAAGGGATTATCACGTACTGTTCTTCATTCTATCATTTTGTCTTGGATGTCCCATACTTTTAATCCCCTGTATCATATGCGTCCGTTTCGTGGCATTTCACCATCTCTAGCTTCCATGAATGTGGAGCATAATGATTTGGTAGATCTAGCTCCAGTCCTTAGAAGCATTTTAAATCTGCGTACTGTCTTAGTGCAATGTGTCACGGAGTATCCAATACTTCAACAAGTAACAGCTATTTTGGAAGAAGTTCGTTGTGTAACTTGGACTACATCTACACAACTTTCCAACCATCCATTCAGTCCATATTTGATTCAAATTGGAGGTTATCAAGAAGAAGTCTTCAACACTCTCCGCAAAAGCATTTATGATGAGGAATTGGCAGCCAGACAGACTCGTAAAGTTTTTGTCCCTAGTGACAATTATCCTCATTGGTTGGCTTATAAGAATGAGGGACACTCAGCCAAATTCACCGTGCCTGACAATTTTCACATGAATGGAATGATTTTGTGTGTTGAGCATTTATCACGCTTGGGAGACCCAACTCAATATCTTAGTTGTGTCTTAATGGTTAATTACACAAAGTGCATAATCCAGTTATTCAATCGAGAAACACTAACGTCCTTGAATGATGTTGATTGGCAGGGCGTGATATCACATCTGGGATATGGAGACAAGTTGGAGATTTTTATTATTTTTGAGAAAGGATTTGAAGTCCAGAAGACAGCTGTCTATCTAGTGTGTAATGATCAATTGACAGAAAGTCAATGTAACGAGCCCTAA 1932 0.383 LPNXFNKLARSAVAYCGGLPLALEVLGSYLSKRSENEWRSVLSKLEIIPNTQIQNILRISFDGLREKEKDIFLDVCCFFIGKDRGYVTEILNGCGLDADFGIKVLIKRGLLKIEKKNKLGMHHLLRDMGREIVRQTSTMQPGKRSRLWLPKDVLDVLTKNTGTEAIVGLSLNTKLTNSDSFKADAFKEMKTLRFLQLGHVRLTGDYGYLSKQLRCISWQGFSLEHIPNNFYLEGAIVMDFQHSNLRLLWKEPTVLPWLKILNLSHSKYLTETPDFSKLPSLEKLILKHCVSLGKVHQSIGDLHNLLLINLKGCTNLSNLPSETYKLKSLKTLILSGCLKIDIFKEDIMHMKSLKTLISHNTAVKQVPISVVSSKSIGYIQVDEGKGLSRTVLHSIILSWMSHTFNPLYHMRPFRGISPSLASMNVEHNDLVDLAPVLRSILNLRTVLVQCVTEYPILQQVTAILEEVRCVTWTTSTQLSNHPFSPYLIQIGGYQEEVFNTLRKSIYDEELAARQTRKVFVPSDNYPHWLAYKNEGHSAKFTVPDNFHMNGMILCVEHLSRLGDPTQYLSCVLMVNYTKCIIQLFNRETLTSLNDVDWQGVISHLGYGDKLEIFIIFEKGFEVQKTAVYLVCNDQLTESQCNEP 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6362g00001 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 74 IPR027417 -
Vium6362g00001 643 SUPERFAMILY "Winged helix" DNA-binding domain 52 157 IPR036390 -
Vium6362g00001 643 Gene3D - 2 65 IPR042197 -
Vium6362g00001 643 PRINTS Disease resistance protein signature 324 340 - -
Vium6362g00001 643 PRINTS Disease resistance protein signature 16 30 - -
Vium6362g00001 643 Gene3D Ribonuclease Inhibitor 167 467 IPR032675 -
Vium6362g00001 643 SUPERFAMILY L domain-like 179 445 - -
Vium6362g00001 643 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 357 IPR044974 GO:0006952
Vium6362g00001 643 Pfam NB-ARC domain 6 47 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6362g00001 Vium-Chr6362 3683 6418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6362g00001 2 370 WRKY Transcription Factor Family AT4G12020 32.987 7.43e-46 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6362g00001 - - vun:114167037 980.704