Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6359g00001 ATGGGAAGGATGCCATGCTGTGAGAAGGTAGGGTTCAAGAAAGGACCATGGACTCCAGAAGAAGACAATAAGCTCCTTGCTTATGTTGAAAAACATGGCCATGGAAATTGGCGGTCAGTACCTGCCAAAGCAGGTCTTGAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTATCTCAAACCTGATATAAAACGAGGAAACTTCAGCTCGGAGGAAGACCACACCATTATTCAACTCCATGCTCTTCTTGGAAACAAATGGTCAATCATAGCAGCTCATCTGCCTCAAAGAACGGACAATGAAATCAAGAATTATTGGAACACCAATGTCAAGAAAAGACTCATCAGAATGGGCTTAGATCCGCTCACTCACAAACCAATAAAAAGGAACAACTTTGAAGACTATGGCGGTGGTCATCATGAGCAGTCCAAGGACACCATGAACATGGATCACGTGGCTCAGTGGGAGAATGCTCGACTTGAAGCTGAAGCCAGAGGATCTATGTTGCAAGTTGAATCTCACTCCTCACATCACCCTCAGCTAATGTTGAGCAAAATCCCAACACAACTTTCTCCTTCCTCTTCAGATTCACTATCAATCAAACACAACACAGTATACAACATGTATGACCTTATACTTGCCACAAATCATGACCTTCCATCACCAGTATCCTCGTTCAGCGTCACCGGTTGGAAGCTTCCTTTAGTCTCTACCAATATTAAACTATTCACCGTCACCGGAACATCACTCTCTTCTGAGTCTGATTTTAATGTGTCTGAAACTAGTTTTCAAATGATAGAAGACCGTGTGTCAAACTTGCAAGATGATGACATCACCATGGCTCTGGAAGCATTTACAACCGCAAGATGTGAGAGTCTTCAAGAGTTGTTAAGGGGTTCCACACTGACATGGTAG 921 0.4321 MGRMPCCEKVGFKKGPWTPEEDNKLLAYVEKHGHGNWRSVPAKAGLERCGKSCRLRWINYLKPDIKRGNFSSEEDHTIIQLHALLGNKWSIIAAHLPQRTDNEIKNYWNTNVKKRLIRMGLDPLTHKPIKRNNFEDYGGGHHEQSKDTMNMDHVAQWENARLEAEARGSMLQVESHSSHHPQLMLSKIPTQLSPSSSDSLSIKHNTVYNMYDLILATNHDLPSPVSSFSVTGWKLPLVSTNIKLFTVTGTSLSSESDFNVSETSFQMIEDRVSNLQDDDITMALEAFTTARCESLQELLRGSTLTW 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6359g00001 306 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium6359g00001 306 CDD SANT 69 112 IPR001005 -
Vium6359g00001 306 FunFam MYB transcription factor 68 129 - -
Vium6359g00001 306 CDD SANT 16 61 IPR001005 -
Vium6359g00001 306 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium6359g00001 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vium6359g00001 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vium6359g00001 306 SMART sant 13 63 IPR001005 -
Vium6359g00001 306 SMART sant 66 114 IPR001005 -
Vium6359g00001 306 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium6359g00001 306 Gene3D - 13 66 - -
Vium6359g00001 306 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium6359g00001 306 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vium6359g00001 306 Gene3D - 69 116 - -
Vium6359g00001 306 FunFam MYB-related transcription factor 13 66 - -
Vium6359g00001 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6359g00001 Vium-Chr6359 2611 4096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6359g00001 1 167 MYB Transcription Factor Family AT5G15310 68.862 5.08e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium6359g00001 Myb_DNA-binding 4.7e-17 CL0123