Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6358g00008 ATGTATTCAATGGCAATGGAATCATCAAAAGGGTACTCACACTATACAAAGGAGGATCTACACATCATGAAAAGCAAAAGCAAGAAGAATAACACACCAAGAGAAATTGAAATGGAAGGCAAAGCTTTAGGAGAAGTGAGAAGGCTTCACATCGTTTACTTCCTCAGTCAGATAGGTGGTCGTGCAGATCATCCTCATCTAATTCGTGTTCTTCATCTTACTCGTAATGGGGTTTATCTTAGAGATGTCAAGAGATGGCTTGGGGAATTGAGAGGAAAAGACTTGCCTGAGGCATTTTCTTGGTCCTACAAGAGAAGGTACAAGAGTGGATATGTGTGGCAAGACTTGCTGGATGACGACCTCATAACCCCCATCTCTGACAATGAATACATCCTCAAAGGATCACAAATCCACACTACCCCATTTGCAACAACTCCTTCACTGGAAGAAAAGAAAGCTGTAGGTTGTGATATCCATGCTGAAAAGATCTGCCCTCAATTACAAGTTGTAGAGGACAAAGAACACCAGCAGCAGCAGCAGCCGCCACTGTCTCTAGCAGAAGAAGAATCTCAGATTCAACCAGACCAGAATTCGAAGACAAATTCTCCAACAAAAGGGTCATCAGAAATCAGTCAGGACTCGTTGGTCTTCAGCTCAGACAGGTCTTCTGTGACAGATGATGACTCTTCTAAGGTTGAAGAAGAGAAGCACTTAGAGATCACAACAGGCAGTGAAATGCACCAGGAGAAATTAGAGACTTTCTCATTGCCTTCCTTGTATCACAATCTGTTGAGTAAGAAGGGCACTCACAAAGATGACCAAAATAAGACTCACTCACCTGATTCATCCCTGTCCACCATATCCACATCATCATCTCAATCATCCTTCACTAAGATCAGAAGCAATTCTACCAAAGTTTCTAATATTTTTCGAAATTGGATCACTTGTGGAACTGTGGAAACAAATGATGCAGCACTCATCATGATGAACCCGGCTCAAACAAAAATTTCCAAGGAACCCAGCAACATACCTGAAACAAAAGCTGAGATTTGTAAGGGAGACCGATTGGGAGGATCAGAGAGGTGCTTTAGGACTTCTTGGGGTCATCAAGACCAGAAACAGCAATATGGCGCAAGAAAAAGCTTTGATGGAGAGGAAACAAACAGGAGCAGGAAAAAGTTAGCCGACTTGCTAAATCAAGGTTCTTCCAAACCATTTGGTGGACCAATTTGCTCGCAATGTGGGAAGTCGTTTAAGCCTGAGAAAATGTACAAACACATGAAGTCTTGTAAAGGAATGAAAGCCTTGGGAAAGTCAGCTCCAATTGTTGAGGAGGCACAGCTTCCGAGATCATCAACTTCATCCCATACACATTACTTTTTGACCAACTAA 1392 0.4239 MYSMAMESSKGYSHYTKEDLHIMKSKSKKNNTPREIEMEGKALGEVRRLHIVYFLSQIGGRADHPHLIRVLHLTRNGVYLRDVKRWLGELRGKDLPEAFSWSYKRRYKSGYVWQDLLDDDLITPISDNEYILKGSQIHTTPFATTPSLEEKKAVGCDIHAEKICPQLQVVEDKEHQQQQQPPLSLAEEESQIQPDQNSKTNSPTKGSSEISQDSLVFSSDRSSVTDDDSSKVEEEKHLEITTGSEMHQEKLETFSLPSLYHNLLSKKGTHKDDQNKTHSPDSSLSTISTSSSQSSFTKIRSNSTKVSNIFRNWITCGTVETNDAALIMMNPAQTKISKEPSNIPETKAEICKGDRLGGSERCFRTSWGHQDQKQQYGARKSFDGEETNRSRKKLADLLNQGSSKPFGGPICSQCGKSFKPEKMYKHMKSCKGMKALGKSAPIVEEAQLPRSSTSSHTHYFLTN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6358g00008 463 MobiDBLite consensus disorder prediction 367 387 - -
Vium6358g00008 463 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 36 439 IPR010369 -
Vium6358g00008 463 MobiDBLite consensus disorder prediction 171 223 - -
Vium6358g00008 463 MobiDBLite consensus disorder prediction 267 298 - -
Vium6358g00008 463 MobiDBLite consensus disorder prediction 171 249 - -
Vium6358g00008 463 MobiDBLite consensus disorder prediction 224 246 - -
Vium6358g00008 463 Pfam Protein SOSEKI, plant 50 325 IPR010369 -
Vium6358g00008 463 MobiDBLite consensus disorder prediction 279 298 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6358g00008 DUF966 3.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6358g00008 - - vun:114179809 850.121