Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium634g00004 ATGATATCAGACCCAGAAATGAACACCAAAAGCATCACCTCAAATCTAAGCCACCACCACAACAACCCGTCATCATGGGTTCTCTTCGCCACACTTTTCCTCTCGTCTTTGTCCTTCTCACTCTCCGATCCAAGAATCACCGAAGCAGGGCTCTACTGTGGAACCGCCAAGGCCCCTCTGAAAGCCAACTACATCCCAAGTTTCACCAAGGAAATGGAGAGCCTCTCGCAGTTGGTGACCAACCAAAACTGGGGCACTCACTTTGTGAACACTTCAGGCTCGTCGATTCCCATTTATGGCTTTGCACAATGCTTCAAGGACCTGTCCAACACCGATTGTCTTCTCTGCTACGCAGCAAGCCGTACCAAGATTCCACGCTGTTTACCTTCTGTCTCTGCGCGCATCTACCTTGATGGCTGCTTCTTGCGCTATGACAACTACAGCTTCTATGCGGAGGTCAGTGACCCTTTGAGGGATACAGTGAACTGCACCTCACAGCATGGAACGGTTGTTGATAAAACTGAAAGGTTGGAACTTGAGGAAAGCGTTGGAAGGGTGGTTGAGACTGTGACCAACAGGGCTCTGGCAAATGGTGGTGGCTTTGGTGTGGGAGAGGTTGAGGGGGTTTACGCATTGGCACAGTGCTGGAATACCATTGGGAGTGATGGGTGCAGAGAGTGTTTGAGGAAAGCTGGGAAGGAGGTGAGAGGGTGCTTGCCTAAGAGGGATGGGAGGGCCTTGAATGCTGGCTGTTATTTGAGGTATTCGACAAACATGTTCTACAATGAAGATGGCGATGCCGATGGGAAAAATGGATTCTTAAGAAGAGGAGGAGTAATAGTAGCAGAAGTGTTAGCAGCAGCTGCAATTTTAGTGCTTAGTCTCTCTACCTCCTATATAGCCTTCACAAAATTAACTAGGATTAAAAAAGAAAACAATAATGTTGGTCAGATTCCCTCTTCCATAACCAAATCTAGCTTGAATTACAAGTACGAAACTCTTGAGAAGGCCACGGATTATTTTAACTCTTCAAGAAAAATAGGCCAAGGTGGAGCTGGCTCAGTTTTCAAAGGTATTCTCCCAAATGGGAAAGTTGTTGCAGTTAAAAGATTGATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAACGAAGTGAACTTGATTAGCGGTATTGAACACAAGAACCTTGTCAAACTATTGGGATGTAGCATTGAGGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTGCCCAAAAAGAGTTTAGACCAATTTATCTTTGAAAAAAACAGAACTCAGATTCTAAACTGGAAGCAGAGGTTTAATATCATTCTTGGAACGGCAGAGGGGCTTGCATATCTTCATCAAGGTACCAAAATAAGAATCATTCATCGAGATATCAAAAGCAGCAATGTTCTTCTGGACGAGAATCTCACTCCCAAGATTGCAGATTTCGGCCTTGCCCGGTGTTTTGGAGCAGATAAGTCACATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATTAGAGGACAACTCACAGATAAAGCTGATGTGTATAGTTTTGGAGTACTTGTTCTTGAGGTTGTAACTGGGAGGAGAAACAATGTCTTCCGAGAGGACTCTGGCTCGCTACTACAAACTGTTTGGAAACTTTACCGATCAAACACATTAACTGAAGCTGTTGATCCTTGCTTGGGAGATGATTATCCTGCAACTGGAGCATCAAGGGTATTTCAAATTGGGTTGCTTTGCACACAAGCTTCTGCCTCCCTAAGACCATCCATGTCTCAAGTTGTTTACATGCTGATTAATTCAAATGAAGACGTTCCTACACCGAATCAGCCCCCATTTTTGAACACTGGAATGCTGGACTCAGATAGCTCCATTAAGTCTTATAGCACTAACAGCTTCATATCCAATGCCTTGAAGAAGATTGGAGCATCATCCTACAGCTACTCAGAGTCCTCTTGTTCACGCAACTCAGATGGGCCATCAAGAAGTGAAGAATCAATTGTTCAAGTTTGA 2046 0.4472 MISDPEMNTKSITSNLSHHHNNPSSWVLFATLFLSSLSFSLSDPRITEAGLYCGTAKAPLKANYIPSFTKEMESLSQLVTNQNWGTHFVNTSGSSIPIYGFAQCFKDLSNTDCLLCYAASRTKIPRCLPSVSARIYLDGCFLRYDNYSFYAEVSDPLRDTVNCTSQHGTVVDKTERLELEESVGRVVETVTNRALANGGGFGVGEVEGVYALAQCWNTIGSDGCRECLRKAGKEVRGCLPKRDGRALNAGCYLRYSTNMFYNEDGDADGKNGFLRRGGVIVAEVLAAAAILVLSLSTSYIAFTKLTRIKKENNNVGQIPSSITKSSLNYKYETLEKATDYFNSSRKIGQGGAGSVFKGILPNGKVVAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNRTQILNWKQRFNIILGTAEGLAYLHQGTKIRIIHRDIKSSNVLLDENLTPKIADFGLARCFGADKSHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEVVTGRRNNVFREDSGSLLQTVWKLYRSNTLTEAVDPCLGDDYPATGASRVFQIGLLCTQASASLRPSMSQVVYMLINSNEDVPTPNQPPFLNTGMLDSDSSIKSYSTNSFISNALKKIGASSYSYSESSCSRNSDGPSRSEESIVQV 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium634g00004 681 FunFam Cysteine-rich receptor-like protein kinase 2 46 149 - -
Vium634g00004 681 Gene3D Phosphorylase Kinase; domain 1 301 416 - -
Vium634g00004 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vium634g00004 681 Gene3D Transferase(Phosphotransferase) domain 1 417 620 - -
Vium634g00004 681 SUPERFAMILY Protein kinase-like (PK-like) 324 639 IPR011009 -
Vium634g00004 681 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 99 639 - -
Vium634g00004 681 Pfam Protein kinase domain 342 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium634g00004 681 Gene3D - 49 149 IPR038408 -
Vium634g00004 681 Gene3D - 161 260 IPR038408 -
Vium634g00004 681 FunFam Cysteine-rich receptor-like protein kinase 3 161 260 - -
Vium634g00004 681 ProSiteProfiles Protein kinase domain profile. 341 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium634g00004 681 Pfam Salt stress response/antifungal 63 147 IPR002902 -
Vium634g00004 681 Pfam Salt stress response/antifungal 180 257 IPR002902 -
Vium634g00004 681 ProSiteProfiles Gnk2-homologous domain profile. 46 149 IPR002902 -
Vium634g00004 681 MobiDBLite consensus disorder prediction 657 681 - -
Vium634g00004 681 FunFam Cysteine-rich receptor-like protein kinase 2 307 416 - -
Vium634g00004 681 CDD STKc_IRAK 347 609 - -
Vium634g00004 681 FunFam Cysteine-rich receptor-like protein kinase 2 417 617 - -
Vium634g00004 681 ProSiteProfiles Gnk2-homologous domain profile. 158 260 IPR002902 -
Vium634g00004 681 SMART serkin_6 341 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium634g00004 Vium-Chr634 43473 47305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium634g00004 27 506 Receptor kinase-like Gene Family AT5G40380 56.757 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium634g00004 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium634g00004 - - gmx:100790404 1110.9