Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium634g00003 ATGATATCAGACCCAGAAATGAACACCAAAAGCATCACCTCAAATCTAAGCCACCACCACAACAACCCGTCATCATGGGTTCTCTTCGCCACACTTTTCCTCTCGTCTTTGTCCTTCTCACTCTCCGATCCAAGAATCACCGAAGCAGGGCTCTACTGTGGAACCGCCAAGGCCCCTCTGAAAGCCAACTACATCCCAAGTTTCACCAAGGAAATGGAGAGCCTCTCGCAGTTGGTGACCAACCAAAACTGGGGCACTCACTTTGTGAACACTTCAGGCTCGTCGATTCCCATTTATGGCTTTGCACAATGCTTCAAGGACCTGTCCAACACCGATTGTCTTCTCTGCTACGCAGCAAGCCGTACCAAGATTCCACGCTGTTTACCTTCTGTCTCTGCGCGCATCTACCTTGATGGCTGCTTCTTGCGCTATGACAACTACAGCTTCTATGCGGAGGTCAGTGACCCTTTGAGGGATACAGTGAACTGCACCTCACAGCATGGAACGGTTGTTGATAAAACTGAAAGGTTGGAACTTGAGGAAAGCGTTGGAAGGGTGGTTGAGACTGTGACCAACAGGGCTCTGGCAAATGGTGGTGGCTTTGGTGTGGGAGAGGTTGAGGGGGTTTACGCATTGGCACAGTGCTGGAATACCATTGGGAGTGATGGGTGCAGAGAGTGTTTGAGGAAAGCTGGGAAGGAGGTGAGAGGGTGCTTGCCTAAGAGGGATGGGAGGGCCTTGAATGCTGGCTGTTATTTGAGGTATTCGACAAACATGTTCTACAATGAAGATGGCGATGCCGATGGGAAAAATGGATTCTTAAGAAGAGGAGGAGTAATAGTAGCAGAAGTGTTAGCAGCAGCTGCAATTTTAGTGCTTAGTCTCTCTACCTCCTATATAGCCTTCACAAAATTAACTAGGATTAAAAAAGAAAACAATAATGTTGGTCAGATTCCCTCTTCCATAACCAAATCTAGCTTGAATTACAAGTACGAAACTCTTGAGAAGGCCACGGATTATTTTAACTCTTCAAGAAAAATAGGCCAAGGTGGAGCTGGCTCAGTTTTCAAAGGTATTCTCCCAAATGGGAAAGTTGTTGCAGTTAAAAGATTGATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAACGAAGTGAACTTGATTAGCGGTATTGAACACAAGAACCTTGTCAAACTATTGGGATGTAGCATTGAGGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTGCCCAAAAAGAGTTTAGACCAATTTATCTTTGAAAAAAACAGAACTCAGATTCTAAACTGGAAGCAGAGGTTTAATATCATTCTTGGAACGGCAGAGGGGCTTGCATATCTTCATCAAGATTTCGGCCTTGCCCGGTGTTTTGGAGCAGATAAGTCACATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATTAGAGGACAACTCACAGATAAAGCTGATGTGTATAGTTTTGGAGTACTTGTTCTTGAGGTTGTAACTGGGAGGAGAAACAATGTCTTCCGAGAGGACTCTGGCTCGCTACTACAAACTGTTTGGAAACTTTACCGATCAAACACATTAACTGAAGCTGTTGATCCTTGCTTGGGAGATGATTATCCTGCAACTGGAGCATCAAGGGTATTTCAAATTGGGTTGCTTTGCACACAAGCTTCTGCCTCCCTAAGACCATCCATGTCTCAAGTTGTTTACATGCTGATTAATTCAAATGAAGACGTTCCTACACCGAATCAGCCCCCATTTTTGAACACTGGAATGCTGGACTCAGATAGCTCCATTAAGTCTTATAGCACTAACAGCTTCATATCCAATGCCTTGAAGAAGATTGGAGCATCATCCTACAGCTACTCAGAGTCCTCTTGTTCACGCAACTCAGATGGGCCATCAAGAAGTGAAGAATCAATTGTTCAAGTTTGA 1965 0.4494 MISDPEMNTKSITSNLSHHHNNPSSWVLFATLFLSSLSFSLSDPRITEAGLYCGTAKAPLKANYIPSFTKEMESLSQLVTNQNWGTHFVNTSGSSIPIYGFAQCFKDLSNTDCLLCYAASRTKIPRCLPSVSARIYLDGCFLRYDNYSFYAEVSDPLRDTVNCTSQHGTVVDKTERLELEESVGRVVETVTNRALANGGGFGVGEVEGVYALAQCWNTIGSDGCRECLRKAGKEVRGCLPKRDGRALNAGCYLRYSTNMFYNEDGDADGKNGFLRRGGVIVAEVLAAAAILVLSLSTSYIAFTKLTRIKKENNNVGQIPSSITKSSLNYKYETLEKATDYFNSSRKIGQGGAGSVFKGILPNGKVVAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNRTQILNWKQRFNIILGTAEGLAYLHQDFGLARCFGADKSHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEVVTGRRNNVFREDSGSLLQTVWKLYRSNTLTEAVDPCLGDDYPATGASRVFQIGLLCTQASASLRPSMSQVVYMLINSNEDVPTPNQPPFLNTGMLDSDSSIKSYSTNSFISNALKKIGASSYSYSESSCSRNSDGPSRSEESIVQV 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium634g00003 654 Pfam Salt stress response/antifungal 180 257 IPR002902 -
Vium634g00003 654 Pfam Salt stress response/antifungal 63 147 IPR002902 -
Vium634g00003 654 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 99 456 - -
Vium634g00003 654 FunFam Cysteine-rich receptor-like protein kinase 2 307 416 - -
Vium634g00003 654 FunFam Cysteine-rich receptor-like protein kinase 3 161 260 - -
Vium634g00003 654 ProSiteProfiles Gnk2-homologous domain profile. 46 149 IPR002902 -
Vium634g00003 654 MobiDBLite consensus disorder prediction 630 654 - -
Vium634g00003 654 Gene3D - 49 149 IPR038408 -
Vium634g00003 654 Gene3D - 161 260 IPR038408 -
Vium634g00003 654 Gene3D Transferase(Phosphotransferase) domain 1 417 593 - -
Vium634g00003 654 ProSiteProfiles Gnk2-homologous domain profile. 158 260 IPR002902 -
Vium634g00003 654 SUPERFAMILY Protein kinase-like (PK-like) 324 612 IPR011009 -
Vium634g00003 654 FunFam Cysteine-rich receptor-like protein kinase 2 46 149 - -
Vium634g00003 654 ProSiteProfiles Protein kinase domain profile. 341 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium634g00003 654 Pfam Protein tyrosine and serine/threonine kinase 344 456 IPR001245 GO:0004672|GO:0006468
Vium634g00003 654 Pfam Protein tyrosine and serine/threonine kinase 457 580 IPR001245 GO:0004672|GO:0006468
Vium634g00003 654 Gene3D Phosphorylase Kinase; domain 1 301 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium634g00003 Vium-Chr634 43468 47305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium634g00003 27 479 Receptor kinase-like Gene Family AT5G40380 52.599 2.04e-172 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium634g00003 PK_Tyr_Ser-Thr 2.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium634g00003 - - gmx:100790404 1045.03