Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6349g00001 ATGGGTAGAAGCCAAAACCCCACAAACATGGAAATTGATCTATCTTTGAAGATAGATGCTGATGATGGACAAAAACCACAACTCGATGAGCAAGTCAAAGAGTATAACGACGAACAAAAAATGTCACAGATTCTTGATCATAACAAGGAAGAAGTCCCTGAAGCTGCAGCTGGTGAAATAGAAGATGATGCATCAGTGGTACAAACATCTTTTCAAGATAACACAAAAACAAAAGAGTTAAGTGTCCTACAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTTGTAGAACAAACAATGAAAGACTATTATGATCTGCAGATGAAATTCTCAGCTATCCAGGAAAACAATAAAAGAAAGGATCATGAAATTTCTCTCTCCCTTCAAGACATTGCCACCACCAGCGGTGAAGGACCATCGAGAATTCTTGAGATCGTGAGTAAGAAAATTCAAAGGGCTCCATCTCCTCCAAACACTGATGATGACAGTTTAAGCGAGAGTGAATTGGGTTTATCACTGAGGTTGCAGCCAAGCACAAGTCAAAAAGAAAGTGACGTGGGAAACAAGGAAGACAGAAAAGATCAGCAATTGGCAAGTTTTGTGTCAGTGCAGAACAAACTACAGCGGACACATGAGTTGCCCGGTATCACTACCCATGCTATCTCCCCTCCAAACAGAAAGGCTAGGGTTTCCGTTAGAGCAAGATGTGAAGCTGCCACAATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAAATTGCAAAGGGAAATCCATGTCCACGAGCATATTATCGTTGCACTGTAGCCCCAGGCTGCCCCGTTAGGAAACAGGTACAAAGATGCATAGATGACATGTCGATTCTTATTACAACCTACGAAGGGACACATAATCATCCACTTCCTGTGGGTGCAACTGCCATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTCATGTTGCTAGATTCAAGCAACCCTATTTCAGATGGCACTTCTAGTTTCACTCAAGCACCCCTTCCTTACAACACCTTCCACCCATTAAACTCAGCTTCGAATTTCAGGAGCATAAACCCCAATGATCCATCAAAAGGGGTTGTTCTTGATCTTACAAGCAATCTCAGTGAACCACTACGTTTTTCAACCGGTAGCTCCTCAAATACTACAACTGACACCCGATTTTCTTGGATGCCAAACAAATACCATGGTGGTGGTGCAATCTCAATGAACAACAATTTTCACAAGCCTAGACCAGTGGACATTCATGATAGAATGTGGAAAGGAGAAGAAAGCAAGCAACTTGATGAGAATGTTTCTGCAATTGCCTCAGATCCCAAGTTTAGGGTTGCTGTTGCTGCAGCCATAACATCTCTCATGAATAAAGAGAGCCACAATGCTACTCATCCTATAGGGACTTCATTTGGTCCTAGGAGTGGCCAAAATGGTAGCTAG 1464 0.4255 MGRSQNPTNMEIDLSLKIDADDGQKPQLDEQVKEYNDEQKMSQILDHNKEEVPEAAAGEIEDDASVVQTSFQDNTKTKELSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIQENNKRKDHEISLSLQDIATTSGEGPSRILEIVSKKIQRAPSPPNTDDDSLSESELGLSLRLQPSTSQKESDVGNKEDRKDQQLASFVSVQNKLQRTHELPGITTHAISPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDGTSSFTQAPLPYNTFHPLNSASNFRSINPNDPSKGVVLDLTSNLSEPLRFSTGSSSNTTTDTRFSWMPNKYHGGGAISMNNNFHKPRPVDIHDRMWKGEESKQLDENVSAIASDPKFRVAVAAAITSLMNKESHNATHPIGTSFGPRSGQNGS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6349g00001 487 Gene3D WRKY domain 231 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6349g00001 487 Coils Coil 80 107 - -
Vium6349g00001 487 SUPERFAMILY WRKY DNA-binding domain 239 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium6349g00001 487 SMART WRKY_cls 246 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6349g00001 487 FunFam probable WRKY transcription factor 31 231 308 - -
Vium6349g00001 487 ProSiteProfiles WRKY domain profile. 241 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6349g00001 487 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 61 466 IPR044810 GO:0003700
Vium6349g00001 487 MobiDBLite consensus disorder prediction 157 188 - -
Vium6349g00001 487 Pfam WRKY DNA -binding domain 247 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium6349g00001 487 MobiDBLite consensus disorder prediction 1 24 - -
Vium6349g00001 487 MobiDBLite consensus disorder prediction 468 487 - -
Vium6349g00001 487 MobiDBLite consensus disorder prediction 154 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6349g00001 Vium-Chr6349 10439 13027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6349g00001 83 369 WRKY Transcription Factor Family AT1G68150 53.000 9.43e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium6349g00001 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6349g00001 - - var:108321024 858.596