Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6343g00001 ATGGAAACATCACTTAATACTATGATGAGGCTCGTGTCGGGAAAGAGATTCTACGGTGATGACTGTGATGTGAGTGATGTGGAGAAGGCCAAAGAATTTAGAGGTATCCTTAGAGAGATGGTGTCGTTAGCAGGAGTAAATAACCGTGGAGACTTCTTGCCTTTCTTGAGGTGGTTTGATTTAGATAATTTGGAAAAGAGACTAAAGAACATTGGGAAGAGAATCGATGCATTCTTACAATCACTCATTGACGAAATTCGTGCTTCAAATAAGACTACCAATACTATGATATCTCAGCTCTTAGTTCAACAACGAACACAACCTGAACAATACAGCGATCAAATTATCAAAGGACTTTGCATGAGTATGTTACTTGCAGGAACAGATACATCAGCTTTGACTTTAGAATGGGGAATGGCTAATTTATTGAACCATCCAGAAGTTTTAAAGAGAGCAAAAGAAGAGCTAGACACTCACGTGGGATCAGATCGTCTGGTAGATGAATCAGATATGTCAAAACTTCCTTATGTTCTAAACATCTTTTTCGAGACGATAAGATTGCATCCTGCTGCACCACTTTGGTCACCACATATGTCTTCAGAAGATTGTACCATCGGAGGATATAATCTCCCAAAAAATACAATTCTGTTGGTTAATGCATGGTCCATTCATCACGATCCAACTTTGTGGAAAAACCCATATGAATTTAGGCCTGAAAGGTTTGAGAAGGAATGTGACTCAAGCAGTTTGCTTTCATTTGGATTAGGGAGGAGGTCTTGTCCTGGAAACAACTTGGCTCAACGTACTGTGGGATTAGCTTTGGCTTCATTGATTCAATGTTTTGAGTGGCAACGAATCGGTAAGGAAGAAATTGATATGACTGAAGCAAAGGGAATCACTATATCAAGGCAAAACCCATTGGAAGTTATGTGCAAAGCTCGTCAAATCCCAGCTATTACGGATCTGTATTGA 972 0.3961 METSLNTMMRLVSGKRFYGDDCDVSDVEKAKEFRGILREMVSLAGVNNRGDFLPFLRWFDLDNLEKRLKNIGKRIDAFLQSLIDEIRASNKTTNTMISQLLVQQRTQPEQYSDQIIKGLCMSMLLAGTDTSALTLEWGMANLLNHPEVLKRAKEELDTHVGSDRLVDESDMSKLPYVLNIFFETIRLHPAAPLWSPHMSSEDCTIGGYNLPKNTILLVNAWSIHHDPTLWKNPYEFRPERFEKECDSSSLLSFGLGRRSCPGNNLAQRTVGLALASLIQCFEWQRIGKEEIDMTEAKGITISRQNPLEVMCKARQIPAITDLY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6343g00001 323 PANTHER CYTOCHROME P450 82C3-RELATED 2 314 - -
Vium6343g00001 323 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 PRINTS E-class P450 group I signature 115 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 PRINTS E-class P450 group I signature 135 161 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 PRINTS E-class P450 group I signature 219 243 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 PRINTS E-class P450 group I signature 260 283 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 PRINTS E-class P450 group I signature 3 21 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 PRINTS E-class P450 group I signature 250 260 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 Gene3D Cytochrome P450 1 319 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 PRINTS P450 superfamily signature 260 271 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 PRINTS P450 superfamily signature 126 143 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 PRINTS P450 superfamily signature 179 190 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 PRINTS P450 superfamily signature 251 260 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 Coils Coil 61 81 - -
Vium6343g00001 323 SUPERFAMILY Cytochrome P450 5 314 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 Pfam Cytochrome P450 3 300 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium6343g00001 323 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 253 262 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6343g00001 Vium-Chr6343 28754 30103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6343g00001 1 314 Cytochrome P450 AT5G36220 52.548 2.68e-127 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6343g00001 K13260 - gmx:100811727 454.521