Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6342g00004 ATGGATACTTCCGAAGAAACCCTACTCACCCAATTTGATTGGGATTCGTTCTTCGACCAGGTGCCTGAATTCGACGCCCATGATTTTTTGCAGGATGACACCGCTCCTGTTAGCGTCGCCGGCGACAATCCCTCCCCTAACGACCCCGTTTTGTCCCAAATCGAGAACATTCTAATGGGCCACCCCGAAAACGACGTCGTCTCCACCGAAACGCCGTTGTCCGAGTCGTCTGAGTCCGACTTCTACAGGCTTCTCGAGGAGATTCTAGTGGAGCCCGATGAGGGACCGGAAAGTGAGCGTTCCAAGGCAGAGTCTGAGGAAGGCTCCGAAAAAGACAGAACCGGTGATGCGGTTTCCGATGAACCCACTTCCAAAAAGTTAAAAAGGCAGTTGAGGAATAGGGATGCTGCTGTGAGATCGAGGGAGAGGAAAAAGGCTTATTTGAAAGACCTGGAGATGAAGAGTAGGTATTTAGAAGGGGAATGCAGAAGACTGGGGCATTTGCTTCAGTGCTGCTATGCTGAGAACAATGCTTTGCGGCTTTGCTTGCAATCGCGTGGTGCATATGGTGTTTCCGTGACCTCGCAGGAGTCTGCTGTGCTCTTGTTGGAACCTCTGCTGTTGGGTTCCCTGCTGTGGGTCATGGGCATCATGTGCCATCTCAGTCTGCCCCTAATGCTGTGTCTCACAGCGGTTCTTCCAAGAGAAAACATCGTACAGAAGGGCGTAATAAAGGTAACCCAAAAAGGTCCAGAAAGTAATATCTCCAGGTGTTTCCATATGCAATCATTTGTAAAGAGTAGAAGATGCCAAGCTTCAAGAACAAAGATGAAATTCATTTTTATGTTAATCCACGCGCTTCCTGTTCTTGTCTTCCTTAGTCGCCAAGTTACAAATGCACACACAAAAGTTCCCCATAAATATTTTTTTTTTCTCTCATTGGGAATTCAATTCTTAATTTCCATGGATACTTCCGAAGAAACCCTACTCACCCAATTTGATTGGGATTCGTTCTTCGACCAGGTGCCTGAATTCGACGCCCATGATTTTTTGCAGGATGACACCGCTCCTGTTAGCGTCGCCGGCGACAATCCCTCCCCTAACGACCCCGTTTTGTCCCAAATCGAGAACATTCTAATGGGCCACCCCGAAAACGACGTCGTCTCCACCGAAACGCCGTTGTCCGAGTCGTCTGAGTCCGACTTCTACAGGCTTCTCGAGGAGATTCTAGTGGAGCCCGATGAGGGACCGGAAAGTGAGCGTTCCAAGGCAGAGTCTGAGGAAGGCTCCGAAAAAGACAGAACCGGTGATGCGGTTTCCGATGAACCCACTTCCAAAAAGTTAAAAAGGCAGTTGAGGAATAGGGATGCTGCTGTGAGATCGAGGGAGAGGAATAAGGCTTATTTGAAAGACCTGGAGATGAAGAGTAGGTATTTAGAAGGGGAATGCAGAAGACTGGGGCATTTGCTTCAGTGCTGCTATGCTGAGAACAATGCTTTGCGGCTTTGCTTGCAATCGCGTGGTGCATATGGTGTTTCCGTGACCTCGCAGGAGTCTGCTGTGCTCTTGTTGGAACCTCTGCTGTTGGGTTCCCTGCTGTGGGTCATGGGCATCATGTGCCATCTCAGTCTGCCCCTAATGCTGTGTCTCACAGCGGTTCTTCCAAGAGAAAACATCGTACAGAAGGGCGTAATAAAGGTAACCCAAAAAGGTCCAGAAAGTAATATCTCCAGGTGTTTCCATATGCAATCATTTGTAAAGAGTAGAAGATGCCTAGCTTCAAGAACAAAGATGAAATTCATTTTTATGTTGTAA 1815 0.4821 MDTSEETLLTQFDWDSFFDQVPEFDAHDFLQDDTAPVSVAGDNPSPNDPVLSQIENILMGHPENDVVSTETPLSESSESDFYRLLEEILVEPDEGPESERSKAESEEGSEKDRTGDAVSDEPTSKKLKRQLRNRDAAVRSRERKKAYLKDLEMKSRYLEGECRRLGHLLQCCYAENNALRLCLQSRGAYGVSVTSQESAVLLLEPLLLGSLLWVMGIMCHLSLPLMLCLTAVLPRENIVQKGVIKVTQKGPESNISRCFHMQSFVKSRRCQASRTKMKFIFMLIHALPVLVFLSRQVTNAHTKVPHKYFFFLSLGIQFLISMDTSEETLLTQFDWDSFFDQVPEFDAHDFLQDDTAPVSVAGDNPSPNDPVLSQIENILMGHPENDVVSTETPLSESSESDFYRLLEEILVEPDEGPESERSKAESEEGSEKDRTGDAVSDEPTSKKLKRQLRNRDAAVRSRERNKAYLKDLEMKSRYLEGECRRLGHLLQCCYAENNALRLCLQSRGAYGVSVTSQESAVLLLEPLLLGSLLWVMGIMCHLSLPLMLCLTAVLPRENIVQKGVIKVTQKGPESNISRCFHMQSFVKSRRCLASRTKMKFIFML 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6342g00004 604 SUPERFAMILY Leucine zipper domain 446 502 IPR046347 GO:0003700|GO:0006355
Vium6342g00004 604 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 128 143 IPR004827 GO:0003700|GO:0006355
Vium6342g00004 604 SMART brlzneu 121 185 IPR004827 GO:0003700|GO:0006355
Vium6342g00004 604 SMART brlzneu 442 506 IPR004827 GO:0003700|GO:0006355
Vium6342g00004 604 CDD bZIP_HY5-like 447 497 - -
Vium6342g00004 604 MobiDBLite consensus disorder prediction 89 140 - -
Vium6342g00004 604 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 123 165 IPR004827 GO:0003700|GO:0006355
Vium6342g00004 604 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 8 253 - -
Vium6342g00004 604 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 449 464 IPR004827 GO:0003700|GO:0006355
Vium6342g00004 604 Pfam bZIP transcription factor 443 486 IPR004827 GO:0003700|GO:0006355
Vium6342g00004 604 Pfam bZIP transcription factor 122 165 IPR004827 GO:0003700|GO:0006355
Vium6342g00004 604 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 444 486 IPR004827 GO:0003700|GO:0006355
Vium6342g00004 604 MobiDBLite consensus disorder prediction 413 459 - -
Vium6342g00004 604 Gene3D - 124 178 - -
Vium6342g00004 604 Gene3D - 445 499 - -
Vium6342g00004 604 CDD bZIP_HY5-like 126 176 - -
Vium6342g00004 604 SUPERFAMILY Leucine zipper domain 125 181 IPR046347 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6342g00004 459 600 bZIP Transcription Factor Family AT1G42990 45.205 1.95e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium6342g00004 bZIP_1 5.5e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6342g00004 - - vum:124842973 1176.39