Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6341g00001 ATGAGTTCGGGAAGCCATAGTGATAAGGAGAAGGACAAGCAGAGGGTGAGCCGCACGTCGTTGATACTGTGGCATGCTCACCAAAACGACGCCGCAGCGGTGCGGAAGCTCCTGCAGGAGGATCCTTCGCTGGTGACGGCAAGGGATTACGACAACCGCACCCCGCTCCACGTCGCATCCCTCCACGGCTGGATCGACGTCGCTAAGTGTTTGATCGAGTTCGGCGCCGATGTCAACGCGCAAGATCGTTGGAAAAACACCCCTCTGGCGGATGCGGAAGGAGCTAAGAAGACTGATGTGATCGAGCTTTTGCAATCTCATGGAGGCTCTTCTTATGGGCAAACTGGTAGCCATTTTGAACCGAAGCCTGTTCCGCCGCCGTTGCCGAATAAGTGTGACTGGGAAATCGAACCTACCGAGCTTGACTTCTCCACCTCCACGAGAATTGGAAAGGGGTCTTTTGGTGAGATTTTAAAAGCCCAGTGGCGTGGAACACCAGTTGCTGTTAAACGTATTCTTCCATCTCTTTCAGAAGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTCAATTTGTTAGTGAAACTTCGACACCCCAATATAGTTCAGTTTCTTGGAGCTGTCACTGACAGGAAGCCCCTTATGTTAATTACTGAGTATCTGAAAGGGGGTGATCTTCATCAGTACCTCAAGGATAAAGGTGCACTTAGTCCAGCAACAGCTATCAACTTTTCCATGGATATTGTGAGAGGAATGGCCTATCTTCATAACGAACCAAATGTTATAATTCATCGGGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATACTAGTGCCGACCATTTAAAAGTTGGAGATTTTGGATTGAGTAAGCTTATCACTGTCCAGAGTTCTCATGATGTATACAAGATGACCGGTGAAACTGGGAGCTACCGCTATATGGCTCCTGAAGTGTTCAAACATCGGAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAATCTCGAGCCTTATGATGGAGCAAAACGTGCTGCTGAGGGTCAAAGGCCTTCATTTCGGTCAAAGGGTTATATCAATGAATTGCAAGAATTAACGGAACAGTGTTGGGCTCATGACGTGAATCAGAGACCACCCTTCATAGAGATCCTTAAACGTCTTGAAAAGATCAAGGAGAATTTACATTCAGATCATCACTGGCATTTGTTTGCATCATAA 1260 0.4635 MSSGSHSDKEKDKQRVSRTSLILWHAHQNDAAAVRKLLQEDPSLVTARDYDNRTPLHVASLHGWIDVAKCLIEFGADVNAQDRWKNTPLADAEGAKKTDVIELLQSHGGSSYGQTGSHFEPKPVPPPLPNKCDWEIEPTELDFSTSTRIGKGSFGEILKAQWRGTPVAVKRILPSLSEDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDRKPLMLITEYLKGGDLHQYLKDKGALSPATAINFSMDIVRGMAYLHNEPNVIIHRDLKPRNVLLVNTSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVYSFAMILYEMLEGEPPFANLEPYDGAKRAAEGQRPSFRSKGYINELQELTEQCWAHDVNQRPPFIEILKRLEKIKENLHSDHHWHLFAS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6341g00001 419 ProSitePatterns Protein kinases ATP-binding region signature. 149 170 IPR017441 GO:0005524
Vium6341g00001 419 FunFam Integrin-linked protein kinase family 222 417 - -
Vium6341g00001 419 ProSiteProfiles Protein kinase domain profile. 143 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6341g00001 419 SMART ANK_2a 84 113 IPR002110 GO:0005515
Vium6341g00001 419 SMART ANK_2a 51 80 IPR002110 GO:0005515
Vium6341g00001 419 PRINTS Tyrosine kinase catalytic domain signature 372 394 IPR001245 GO:0004672|GO:0006468
Vium6341g00001 419 PRINTS Tyrosine kinase catalytic domain signature 256 274 IPR001245 GO:0004672|GO:0006468
Vium6341g00001 419 PRINTS Tyrosine kinase catalytic domain signature 218 231 IPR001245 GO:0004672|GO:0006468
Vium6341g00001 419 Gene3D - 2 119 IPR036770 -
Vium6341g00001 419 FunFam serine/threonine-protein kinase STY46-like 136 222 - -
Vium6341g00001 419 Pfam Protein tyrosine and serine/threonine kinase 145 401 IPR001245 GO:0004672|GO:0006468
Vium6341g00001 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Vium6341g00001 419 ProSiteProfiles Ankyrin repeat profile. 51 83 IPR002110 GO:0005515
Vium6341g00001 419 Gene3D Transferase(Phosphotransferase) domain 1 223 416 - -
Vium6341g00001 419 Pfam Ankyrin repeats (3 copies) 18 82 IPR002110 GO:0005515
Vium6341g00001 419 SUPERFAMILY Protein kinase-like (PK-like) 133 414 IPR011009 -
Vium6341g00001 419 SUPERFAMILY Ankyrin repeat 22 112 IPR036770 -
Vium6341g00001 419 SMART serkin_6 143 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6341g00001 419 ProSiteProfiles Ankyrin repeat region circular profile. 51 83 - -
Vium6341g00001 419 Gene3D Phosphorylase Kinase; domain 1 135 222 - -
Vium6341g00001 419 PIRSF ILK 1 419 - -
Vium6341g00001 419 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 80 406 - -
Vium6341g00001 419 CDD STKc_MAP3K-like 149 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6341g00001 Vium-Chr6341 1613 8521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6341g00001 8 419 MAP Kinase Kinase Kinase AT1G14000 83.252 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vium6341g00001 PK_Tyr_Ser-Thr 8.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6341g00001 - - gmx:100793237 771.155